Literature DB >> 17434852

Agent-based modelling as scientific method: a case study analysing primate social behaviour.

Joanna J Bryson1, Yasushi Ando, Hagen Lehmann.   

Abstract

A scientific methodology in general should provide two things: first, a means of explanation and, second, a mechanism for improving that explanation. Agent-based modelling (ABM) is a method that facilitates exploring the collective effects of individual action selection. The explanatory force of the model is the extent to which an observed meta-level phenomenon can be accounted for by the behaviour of its micro-level actors. This article demonstrates that this methodology can be applied to the biological sciences; agent-based models, like any other scientific hypotheses, can be tested, critiqued, generalized or specified. We review the state of the art for ABM as a methodology for biology and then present a case study based on the most widely published agent-based model in the biological sciences: Hemelrijk's DomWorld, a model of primate social behaviour. Our analysis shows some significant discrepancies between this model and the behaviour of the macaques, the genus used for our analysis. We also demonstrate that the model is not fragile: its other results are still valid and can be extended to compensate for these problems. This robustness is a standard advantage of experiment-based artificial intelligence modelling techniques over analytic modelling.

Mesh:

Year:  2007        PMID: 17434852      PMCID: PMC2440780          DOI: 10.1098/rstb.2007.2061

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  15 in total

1.  GUEST EDITORS' INTRODUCTION.

Authors: 
Journal:  J Math Psychol       Date:  2000-03       Impact factor: 2.223

2.  The ecology of action selection: insights from artificial life.

Authors:  Anil K Seth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

3.  Spatial models of political competition with endogenous political parties.

Authors:  Michael Laver; Michel Schilperoord
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

4.  Hierarchy in the organization of a captive baboon group.

Authors:  T E Rowell
Journal:  Anim Behav       Date:  1966-10       Impact factor: 2.844

5.  The evolution of cooperation.

Authors:  R Axelrod; W D Hamilton
Journal:  Science       Date:  1981-03-27       Impact factor: 47.728

6.  'Friendship' for fitness in chimpanzees?

Authors: 
Journal:  Anim Behav       Date:  1999-12       Impact factor: 2.844

7.  Towards the integration of social dominance and spatial structure.

Authors: 
Journal:  Anim Behav       Date:  2000-05       Impact factor: 2.844

Review 8.  Self-organization and natural selection in the evolution of complex despotic societies.

Authors:  C K Hemelrijk
Journal:  Biol Bull       Date:  2002-06       Impact factor: 1.818

9.  An agent-based model of group decision making in baboons.

Authors:  W I Sellers; R A Hill; B S Logan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

10.  Male chacma baboons (Papio hamadryas ursinus) discriminate loud call contests between rivals of different relative ranks.

Authors:  Dawn M Kitchen; Dorothy L Cheney; Robert M Seyfarth
Journal:  Anim Cogn       Date:  2004-05-26       Impact factor: 3.084

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  15 in total

1.  Look before you leap - individual variation in social vigilance shapes socio-spatial group properties in an agent-based model.

Authors:  Ellen Evers; Han de Vries; Berry M Spruijt; Elisabeth H M Sterck
Journal:  Behav Ecol Sociobiol       Date:  2012-03-14       Impact factor: 2.980

2.  The ecology of action selection: insights from artificial life.

Authors:  Anil K Seth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

Review 3.  Introduction. Modelling natural action selection.

Authors:  Tony J Prescott; Joanna J Bryson; Anil K Seth
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

Review 4.  Recent advances in the analysis of behavioural organization and interpretation as indicators of animal welfare.

Authors:  Lucy Asher; Lisa M Collins; Angel Ortiz-Pelaez; Julian A Drewe; Christine J Nicol; Dirk U Pfeiffer
Journal:  J R Soc Interface       Date:  2009-09-09       Impact factor: 4.118

5.  A Bayesian Approach to Social Structure Uncovers Cryptic Regulation of Group Dynamics in Drosophila melanogaster.

Authors:  Brad R Foley; Julia B Saltz; Sergey V Nuzhdin; Paul Marjoram
Journal:  Am Nat       Date:  2015-04-16       Impact factor: 3.926

Review 6.  Why primate models matter.

Authors:  Kimberley A Phillips; Karen L Bales; John P Capitanio; Alan Conley; Paul W Czoty; Bert A 't Hart; William D Hopkins; Shiu-Lok Hu; Lisa A Miller; Michael A Nader; Peter W Nathanielsz; Jeffrey Rogers; Carol A Shively; Mary Lou Voytko
Journal:  Am J Primatol       Date:  2014-04-10       Impact factor: 2.371

7.  An agent-based model of group decision making in baboons.

Authors:  W I Sellers; R A Hill; B S Logan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-09-29       Impact factor: 6.237

8.  Better safe than sorry--socio-spatial group structure emerges from individual variation in fleeing, avoidance or velocity in an agent-based model.

Authors:  Ellen Evers; Han de Vries; Berry M Spruijt; Elisabeth H M Sterck
Journal:  PLoS One       Date:  2011-11-18       Impact factor: 3.240

9.  The EMO-model: an agent-based model of primate social behavior regulated by two emotional dimensions, anxiety-FEAR and satisfaction-LIKE.

Authors:  Ellen Evers; Han de Vries; Berry M Spruijt; Elisabeth H M Sterck
Journal:  PLoS One       Date:  2014-02-04       Impact factor: 3.240

10.  Emergent patterns of social affiliation in primates, a model.

Authors:  Ivan Puga-Gonzalez; Hanno Hildenbrandt; Charlotte K Hemelrijk
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

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