Literature DB >> 17433864

B1 SINEs in different rodent families.

Natalia A Veniaminova1, Nikita S Vassetzky, Dmitri A Kramerov.   

Abstract

B1 SINEs were studied in 22 families covering all major rodent lineages. The number of B1 copies considerably varies, from 1 x 10(4) in Geomyidae to 1 x 10(6) in Myodonta. B1 sequences can be divided into three main structural variants: B1 with a 20-bp tandem duplication (found in Gliridae, Sciuridae, and Aplodontidae), B1 with a 29-bp duplication (found in other families), and proto-B1 without duplication (pB1). These variants can be further subdivided according to their characters, including specific 7-, 9-, or 10-bp deletions. Different B1 subfamilies predominate in different rodent families. The analysis of B1 variants allowed us to propose possible pathways for the evolution of this SINE in the context of rodent evolution.

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Year:  2007        PMID： 17433864     DOI： 10.1016/j.ygeno.2007.02.007

Source DB:  PubMed          Journal:  Genomics        ISSN： 0888-7543            Impact factor:   5.736


  15 in total

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Journal:  Int J Radiat Oncol Biol Phys       Date:  2009-08-01       Impact factor: 7.038

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7.  SINEBase: a database and tool for SINE analysis.

Authors:  Nikita S Vassetzky; Dmitri A Kramerov
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8.  Suprafamilial relationships among Rodentia and the phylogenetic effect of removing fast-evolving nucleotides in mitochondrial, exon and intron fragments.

Authors:  Claudine Montgelard; Ellen Forty; Véronique Arnal; Conrad A Matthee
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9.  Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.

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Journal:  BMC Evol Biol       Date:  2009-04-02       Impact factor: 3.260

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Authors:  Karina A Tatosyan; Danil V Stasenko; Anastasia P Koval; Irina K Gogolevskaya; Dmitri A Kramerov
Journal:  Int J Mol Sci       Date:  2020-05-25       Impact factor: 5.923
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