Literature DB >> 19616745

B1 sequence-based real-time quantitative PCR: a sensitive method for direct measurement of mouse plasma DNA levels after gamma irradiation.

Hengshan Zhang1, Steven B Zhang, Weimin Sun, Shanmin Yang, Mei Zhang, Wei Wang, Chaomei Liu, Kunzhong Zhang, Steven Swarts, Bruce M Fenton, Peter Keng, David Maguire, Paul Okunieff, Lurong Zhang.   

Abstract

PURPOSE: Current biodosimetric techniques for determining radiation exposure have inherent delays, as well as quantitation and interpretation limitations. We have identified a new technique with the advantage of directly measuring circulating DNA by amplifying inter-B1 regions in the mouse genome, providing a sensitive method for quantitating plasma DNA. METHODS AND MATERIALS: Real-time quantitative polymerase chain reaction (PCR) was used to detect levels of DNA by amplifying inter-B1 genomic DNA in plasma samples collected at 0-48 h from mice receiving 0-10 Gy total- or partial-body irradiation ((137)Cs gamma-ray source at approximately 1.86 Gy/min; homogeneity: +/- 6.5%).
RESULTS: The correlation coefficient between DNA levels and the threshold cycle value (C(T)) was 0.996, and the average recoveries of DNA in the assay were 87%. This assay revealed that when BALB/c mice were exposed to 10 Gy total-body irradiation (TBI), plasma DNA levels gradually increased beginning at 3 h after irradiation, peaked at 9 h, and returned to baseline within 48 h. Increased plasma DNA levels were also detected following upper-torso or lower-torso partial-body irradiation; however, TBI approximately doubled those plasma DNA levels at the same radiation dose. This technique therefore reflects total body cell damage. The advantages of this assay are that DNA extraction is not required, the assay is highly sensitive (0.002 ng), and results can be obtained within 2.5 h after collection of plasma samples.
CONCLUSIONS: A radiation dose-dependent increase of plasma DNA was observed in the dose range from 2 to 10 Gy, suggesting that plasma DNA may be a useful radiation biomarker and adjunct to existing cell-based assays.

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Year:  2009        PMID: 19616745      PMCID: PMC2883165          DOI: 10.1016/j.ijrobp.2009.03.009

Source DB:  PubMed          Journal:  Int J Radiat Oncol Biol Phys        ISSN: 0360-3016            Impact factor:   7.038


  39 in total

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Authors:  A V Lichtenstein; H S Melkonyan; L D Tomei; S R Umansky
Journal:  Ann N Y Acad Sci       Date:  2001-09       Impact factor: 5.691

2.  Low-molecular-weight DNA in blood plasma as an index of the influence of ionizing radiation.

Authors:  I N Vasilyeva
Journal:  Ann N Y Acad Sci       Date:  2001-09       Impact factor: 5.691

Review 3.  Gene expression profiles for monitoring radiation exposure.

Authors:  S A Amundson; A J Fornace
Journal:  Radiat Prot Dosimetry       Date:  2001       Impact factor: 0.972

Review 4.  Radiation exposure assessment using cytological and molecular biomarkers.

Authors:  W F Blakely; P G Prasanna; M B Grace; A C Miller
Journal:  Radiat Prot Dosimetry       Date:  2001       Impact factor: 0.972

5.  Analysis of circulating tumor DNA in plasma at diagnosis and during follow-up of lung cancer patients.

Authors:  G Sozzi; D Conte; L Mariani; S Lo Vullo; L Roz; C Lombardo; M A Pierotti; L Tavecchio
Journal:  Cancer Res       Date:  2001-06-15       Impact factor: 12.701

Review 6.  Non-targeted and delayed effects of exposure to ionizing radiation: I. Radiation-induced genomic instability and bystander effects in vitro.

Authors:  William F Morgan
Journal:  Radiat Res       Date:  2003-05       Impact factor: 2.841

7.  Up-regulation, modification, and translocation of S100A6 induced by exposure to ionizing radiation revealed by proteomics profiling.

Authors:  Lukas M Orre; Maria Pernemalm; Johan Lengqvist; Rolf Lewensohn; Janne Lehtiö
Journal:  Mol Cell Proteomics       Date:  2007-09-04       Impact factor: 5.911

8.  Human DNA quantitation using Alu element-based polymerase chain reaction.

Authors:  Jerilyn A Walker; Gail E Kilroy; Jinchuan Xing; Jaiprakash Shewale; Sudhir K Sinha; Mark A Batzer
Journal:  Anal Biochem       Date:  2003-04-01       Impact factor: 3.365

9.  Radiation-induced apoptosis of endothelial cells in the murine central nervous system: protection by fibroblast growth factor and sphingomyelinase deficiency.

Authors:  L A Peña; Z Fuks; R N Kolesnick
Journal:  Cancer Res       Date:  2000-01-15       Impact factor: 12.701

10.  Postradiation DNA polymorphism.

Authors:  S S Sherlina; V G Vladimirov
Journal:  Ann N Y Acad Sci       Date:  2001-09       Impact factor: 5.691

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  3 in total

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Journal:  Radiat Res       Date:  2015-01-09       Impact factor: 2.841

2.  Overexpression of Stat3 increases circulating cfDNA in breast cancer.

Authors:  Yi-Fei Wang; Xue-Jian Wang; Zhong Lu; Shu-Rong Liu; Yu Jiang; Xiao-Qing Wan; Cong-Cong Cheng; Li-Hong Shi; Li-Hua Wang; Yi Ding
Journal:  Breast Cancer Res Treat       Date:  2021-02-25       Impact factor: 4.872

3.  Mitochondrial DNA and functional investigations into the radiosensitivity of four mouse strains.

Authors:  Steven B Zhang; David Maguire; Mei Zhang; Yeping Tian; Shanmin Yang; Amy Zhang; Katherine Casey-Sawicki; Deping Han; Jun Ma; Liangjie Yin; Yongson Guo; Xiaohui Wang; Chun Chen; Alexandra Litvinchuk; Zhenhuan Zhang; Steven Swarts; Sadasivan Vidyasagar; Lurong Zhang; Paul Okunieff
Journal:  Int J Cell Biol       Date:  2014-02-12
  3 in total

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