| Literature DB >> 17428345 |
Gareth Ad Hardy1, Nesrina Imami1, Mark R Nelson2, Ann K Sullivan2, Ron Moss3, Marlén Mi Aasa-Chapman4, Brian Gazzard2, Frances M Gotch1.
Abstract
BACKGROUND: Fully functional HIV-1-specific CD8 and CD4 effector T-cell responses are vital to the containment of viral activity and disease progression. These responses are lacking in HIV-1-infected patients with progressive disease. We attempted to augment fully functional HIV-1-specific CD8 and CD4 effector T-cell responses in patients with advanced chronic HIV-1 infection.Entities:
Year: 2007 PMID: 17428345 PMCID: PMC1864986 DOI: 10.1186/1476-8518-5-6
Source DB: PubMed Journal: J Immune Based Ther Vaccines ISSN: 1476-8518
Figure 1Median absolute CD4 T-cell counts per μl of whole blood (closed diamonds) and median HIV-1 RNA viral load per ml of plasma (open squares) with 1st and 3rd interquartile ranges over the entire study period for group A (A), group B (B), group C (C), and group D (D). A subset of patients were assessed for viral load and CD4 T-cell counts at day 5 of each IL-2 cycle in groups B and C. Results are shown for all patients. Elevations in viral loads occurred more often in viral loads of patients receiving ART and IL-2 without Remune™ (group B), than in patients receiving ART and IL-2 with Remune™ (group C).
Figure 2Mean HIV-1-specific lymphocyte proliferative responses (left-hand panel) with the times of IL-2 and Remune™ administration, showing responses for group A (A), group B (B), group C (C) and group D (D) and mean recall-specific lymphocyte proliferative responses (right-hand panel) with the times of IL-2 and Remune™ administration, for group A (E), group B (F), group C (G) and group D (H). The scale of HIV-1-specific responses is displayed as half the magnitude of that for recall responses.
Figure 3HIV-1-specific IL-4 production and lymphocyte proliferative responses. Significant increases in CT.h4S delta cpm in response to HIV-1-specific IL-4 production were seen over the week 17–65 period (A) for groups B (ART + IL-2), C (ART + IL-2 + Remune™) and D (ART + Remune™), but not for group A (ART alone) (data not shown). Patient 11 is shown as an example of an inverse relationship between lymphocyte proliferative stimulation index (SI) (B) and IL-4 production as delta cpm (C) which was evident for 17 of 28 patients who were assessed for IL-4 production.
HLA class I restricted peptides used for IFN-γ ELISpot assays
| Peptide | Protein | Sequence | HLA-restriction |
| Gag | |||
| g1 | p17 (71–79) | GSEELRSLY | A1 |
| g2 | p17 (77–85) | SLYNTVATL | A*0201 |
| g3 | p17 (20–28) | RLRPGGKKK | A3 |
| g4 | p24 (217–227) | ACQGVGGPGHK | A11 |
| g5 | p17 (84–92) | TLYCVHQRI | A11 |
| g6 | p17 (28–36) | KYKLKHIVW | A24 |
| g7 | p24 (35–43) | EVIPMFSAL | A26 |
| g8 | p24 (16–23) | SPRTLNAW | B7 |
| g9 | p17 (74–82) | ELRSLYNTV | B8 |
| g10 | p24 (197–205) | DCKTILKAL | B8 |
| g11 | p17 (93–101) | EIKDTKEAL | B8 |
| g12 | p17 (24–31) | GGKKKKYKL | B8 |
| g13 | p24 (131–140) | KRWIILGLNK | B27 |
| g14 | p17 (36–44) | WASRELERF | B35A |
| g15 | p17 (124–132) | NSSKVSQNY | B35A |
| g16 | p24 (122–130) | PPIPVGDIY | B35A |
| g17 | p24 (174–184) | AEQASQDVKNW | B44 |
| g18 | p24 (83–92) | VHPVHAGPIA | B55 |
| g19 | p24 (108–117) | TSTLQEQIGW | B57B |
| g20 | p24 (176–184) | QASQEVKNW | B57B |
| g21 | p24 (15–23) | ISPRTLNAW | B57B |
| g22 | p24 (32–40) | FSPEVIPMF | B57B |
| g23 | p17 (92–101) | IEIKDTKEAL | B61 |
| Pol | |||
| p1 | RT (309–317) | ILKEPVHGV | A*0201 |
| p2 | RT (179–187) | VIYQYMDDL | A2 |
| p3 | RT (485–493) | ALQDSGLEV | A2 |
| p4 | RT (341–350) | IYQEPFKLNK | A11 |
| p5 | RT (158–166) | AIFQSSMTK | A11 |
| p6 | IN (179–188) | AVFIHNFKRK | A11 |
| p7 | RT (448–457) | RETKLGKAGY | A29 |
| p8 | RT (392–401) | PIQKETWETW | A32 |
| p9 | RT (18–26) | GPKVKQWPL | B8 |
| p10 | RT (175–183) | HPDIVIYQY | B35A |
| p11 | RT (156–164) | SPAIFQSSM | B35A |
| p12 | RT (432–441) | EPIVGAETFY | B35A |
| p13 | RT (203–212) | EELRQHLLRW | B44 |
| p14 | RT (397–406) | TWETWWTEYW | B44 |
| Nef | |||
| n1 | nef (180–189) | VLEWRFDSRL | A2 |
| n2 | nef (73–82) | QVPLRPMTYK | A11 |
| n3 | nef (75–82) | PLRPMTYK | A11 |
| n4 | nef (84–92) | AVDLSHFLK | A11 |
| n5 | nef (128–137) | TPGPGVRYPL | B7 |
| n6 | nef (90–97) | FLKEKGGL | B8 |
| n7 | nef (13–20) | WPTVRERM | B8 |
| n8 | nef (135–143) | YPLTFGWCY | B18/B49 |
| n10 | nef (186–193) | DSRLAFHH | B35A |
| n11 | nef (74–84) | VPLRPMTY | B35A |
| n12 | nef (116–125) | HTQGYFPDWQ | B57B |
| n13 | nef (92–100) | KEKGGLEGL | B61 |
Peptides were identified from the NIH HIV Molecular Immunology Database website [50]. References for each peptide are also available at this website. RT (reverse transcriptase antigen), IN (integrase antigen). AHLA B35 is associated with rapid progression in HIV-1 infection. BHLA B57 is associated with slow/non progression in HIV-1 infection
Patient HLA types and ELISpot results, showing the sum of delta (background subtracted) IFN-γ spot forming cells (SFC) at weeks 0, 16 and 65 for each patient for whom ELISpot analysis was possible.
| Patient | HLA type (peptides used) | Sum of Δ IFN-γ SFC/106 PBMC | ||||||||
| Week 0 | Week 16 | Week 65 | ||||||||
| Group A | Gag | Pol | Nef | Gag | Pol | Nef | Gag | Pol | Nef | |
| 1 | A1 (g1) | 20 | 20 | 260 | 0 | 0 | 150 | 20 | 10 | 680 |
| 16 | A2, (g2, p1, p2, p3, n1) | 50 | 90 | 110 | 940 | 850 | 320 | 740 | 1200 | 20 |
| 36 | A2, (g2, p1, p2, p3) | F | F | F | 70 | 60 | 30 | 230 | 280 | 370 |
| 52 | A11, (g4, g5, p5, n2) | 670 | 470 | 295 | 910 | 405 | 1280 | 370 | 215 | 165 |
| 54 | A2, (g2, p2, n1) | 80 | 190 | 30 | F | F | F | 290 | 240 | 160 |
| Group B | Gag | Pol | Nef | Gag | Pol | Nef | Gag | Pol | Nef | |
| 7 | A2, (g2, p2, p3, n1) | 500 | 30 | 0 | 1310 | 120 | 20 | 1340 | 190 | 0 |
| 35 | A3, (g3) | 50 | 110 | 75 | 130 | 70 | 25 | 185 | 135 | 115 |
| 57 | A1, (g1) | 490 | 50 | 130 | 190 | 30 | 20 | 450 | 70 | 120 |
| Group C | Gag | Pol | Nef | Gag | Pol | Nef | Gag | Pol | Nef | |
| 4 | A1, (g1) | 220 | nd | 50 | 130 | nd | 40 | 520 | nd | 60 |
| 11 | A1, (g1) | 3820 | 3140 | 2990 | 90 | 50 | 20 | 2820 | 2760 | 960 |
| 14 | A1, (g1) | F | F | F | 1140 | 130 | 20 | 100 | 30 | 70 |
| 34 | A3, (g3) | 320 | 100 | 0 | F | F | F | 520 | 80 | 10 |
| Group D | Gag | Pol | Nef | Gag | Pol | Nef | Gag | Pol | Nef | |
| 13 | A2, (g2, p1, p2, n1) | 50 | 20 | 70 | 730 | 1890 | 1190 | 390 | 640 | 240 |
| 22 | A1, (g1) | 270 | 80 | 120 | F | F | F | 60 | 40 | 260 |
F denotes assay failure. IFN-γ (interferon-gamma), PBMC (peripheral blood mononuclear cells), SFC (spot forming cells). AHLA B35 is associated with rapid progression in HIV-1 infection. BHLA B57 is associated with slow/non progression in HIV-1 infection.