Literature DB >> 1742453

Linear nonequilibrium thermodynamics describes the dynamics of an autocatalytic system.

S Cortassa1, M A Aon, H V Westerhoff.   

Abstract

A model simulating oscillations in glycolysis was formulated in terms of nonequilibrium thermodynamics. In the kinetic rate equations every metabolite concentration was replaced with an exponential function of its chemical potential. This led to nonlinear relations between rates and chemical potentials. Each chemical potential was then expanded around its steady-state value as a Taylor series. The linear (first order) term of the Taylor series sufficed to simulate the dynamic behavior of the system, including the damped and even sustained oscillations at low substrate input or high free-energy load. The glycolytic system is autocatalytic in the first half. Because oscillations were obtained only in the presence of that autocatalytic feed-back loop we conclude that this type of kinetic nonlinearity was sufficient to account for the oscillatory behavior. The matrix of phenomenological coefficients of the system is nonsymmetric. Our results indicate that this is the symmetry property and not the linearity of the flow-force relations in the near equilibrium domain that precludes oscillations. Given autocatalytic properties, a system exhibiting liner flow-force relations and being outside the near equilibrium domain may show bifurcations, leading to self-organized behavior.

Mesh:

Year:  1991        PMID: 1742453      PMCID: PMC1260131          DOI: 10.1016/S0006-3495(91)82114-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

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Authors:  D Juretić; H V Westerhoff
Journal:  Biophys Chem       Date:  1987-10       Impact factor: 2.352

3.  Sigmoidal relation between mitochondrial respiration and log ([ATP]/[ADP])out under conditions of extramitochondrial ATP utilization. Implications for the control and thermodynamics of oxidative phosphorylation.

Authors:  R J Wanders; H V Westerhoff
Journal:  Biochemistry       Date:  1988-10-04       Impact factor: 3.162

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Authors:  H Rottenberg
Journal:  Biophys J       Date:  1973-06       Impact factor: 4.033

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Authors:  C Hyver
Journal:  J Theor Biol       Date:  1972-07       Impact factor: 2.691

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Authors:  J W Stucki; M Compiani; S R Caplan
Journal:  Biophys Chem       Date:  1983-09       Impact factor: 2.352

7.  Relationship between chemiosomotic flows and thermodynamic forces in oxidative phosphorylation.

Authors:  K Van Dam; H V Westerhoff; K Krab; R van der Meer; J C Arents
Journal:  Biochim Biophys Acta       Date:  1980-07-08

8.  Linear relation between rate and thermodynamic force in enzyme-catalyzed reactions.

Authors:  R Van der Meer; H V Westeroff; K Van Dam
Journal:  Biochim Biophys Acta       Date:  1980-07-08

9.  The optimal efficiency and the economic degrees of coupling of oxidative phosphorylation.

Authors:  J W Stucki
Journal:  Eur J Biochem       Date:  1980-08

10.  Thermodynamics of growth. Non-equilibrium thermodynamics of bacterial growth. The phenomenological and the mosaic approach.

Authors:  H V Westerhoff; J S Lolkema; R Otto; K J Hellingwerf
Journal:  Biochim Biophys Acta       Date:  1982-12-31
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  6 in total

1.  How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.

Authors:  M Bier; B M Bakker; H V Westerhoff
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

Review 2.  Quantitative approaches to the analysis of the control and regulation of microbial metabolism.

Authors:  H V Westerhoff; W van Heeswijk; D Kahn; D B Kell
Journal:  Antonie Van Leeuwenhoek       Date:  1991 Oct-Nov       Impact factor: 2.271

3.  Is a constant low-entropy process at the root of glycolytic oscillations?

Authors:  Henrik Seir Thoke; Lars F Olsen; Lars Duelund; R P Stock; Thomas Heimburg; Luis A Bagatolli
Journal:  J Biol Phys       Date:  2018-05-24       Impact factor: 1.365

4.  Computational modeling of mitochondrial function.

Authors:  Sonia Cortassa; Miguel A Aon
Journal:  Methods Mol Biol       Date:  2012

Review 5.  An allometric interpretation of the spatio-temporal organization of molecular and cellular processes.

Authors:  M A Aon; S Cortassa
Journal:  Mol Cell Biochem       Date:  1993-03-10       Impact factor: 3.396

6.  The dynamics of intracellular water constrains glycolytic oscillations in Saccharomyces cerevisiae.

Authors:  Henrik S Thoke; Sigmundur Thorsteinsson; Roberto P Stock; Luis A Bagatolli; Lars F Olsen
Journal:  Sci Rep       Date:  2017-11-24       Impact factor: 4.379

  6 in total

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