Literature DB >> 17416357

An enhanced agent based model of the immune system response.

V Baldazzi1, F Castiglione, M Bernaschi.   

Abstract

We describe some recent enhancements introduced in C-ImmSim, a simulator of the immune system response that we have been developing for a number of years along with preliminary results produced by the simulation of the Highly Active Anti-Retroviral Therapy in HIV-1 infected patients.

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Year:  2007        PMID： 17416357     DOI： 10.1016/j.cellimm.2006.12.006

Source DB:  PubMed          Journal:  Cell Immunol        ISSN： 0008-8749            Impact factor:   4.868


  22 in total

Review 1.  Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Authors:  Vipin Narang; James Decraene; Shek-Yoon Wong; Bindu S Aiswarya; Andrew R Wasem; Shiang Rong Leong; Alexandre Gouaillard
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

2.  Modelling cell surface dynamics and cell-cell interactions using Cell Studio: a three-dimensional visualization tool based on gaming technology.

Authors:  Asaf Liberman; Matan Mussel; Danny Kario; David Sprinzak; Uri Nevo
Journal:  J R Soc Interface       Date:  2019-11-27       Impact factor: 4.118

3.  Agent-based modeling of host-pathogen systems: The successes and challenges.

Authors:  Amy L Bauer; Catherine A A Beauchemin; Alan S Perelson
Journal:  Inf Sci (N Y)       Date:  2009-04-29       Impact factor: 6.795

4.  Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes.

Authors:  Xu Dong; Panagiota T Foteinou; Steven E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

5.  Deep Reinforcement Learning and Simulation as a Path Toward Precision Medicine.

Authors:  Brenden K Petersen; Jiachen Yang; Will S Grathwohl; Chase Cockrell; Claudio Santiago; Gary An; Daniel M Faissol
Journal:  J Comput Biol       Date:  2019-01-25       Impact factor: 1.479

Review 6.  Review of the systems biology of the immune system using agent-based models.

Authors:  Snehal B Shinde; Manish P Kurhekar
Journal:  IET Syst Biol       Date:  2018-06       Impact factor: 1.615

7.  Model refinement through high-performance computing: an agent-based HIV example.

Authors:  Dimitri Perrin; Heather J Ruskin; Martin Crane
Journal:  Immunome Res       Date:  2010-09-27

8.  Utilizing the Heterogeneity of Clinical Data for Model Refinement and Rule Discovery Through the Application of Genetic Algorithms to Calibrate a High-Dimensional Agent-Based Model of Systemic Inflammation.

Authors:  Chase Cockrell; Gary An
Journal:  Front Physiol       Date:  2021-05-19       Impact factor: 4.566

Review 9.  Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses.

Authors:  Marcus J Korth; Nicolas Tchitchek; Arndt G Benecke; Michael G Katze
Journal:  Semin Immunol       Date:  2012-12-05       Impact factor: 11.130

10.  An agent-based model of cellular dynamics and circadian variability in human endotoxemia.

Authors:  Tung T Nguyen; Steve E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2013-01-30       Impact factor: 3.240
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