Literature DB >> 1741253

In vitro definition of the yeast RNA polymerase I promoter.

S Y Choe1, M C Schultz, R H Reeder.   

Abstract

The structure of the ribosomal gene promoter from Saccharomyces cerevisiae has been analyzed in a whole cell in vitro extract. The promoter contains at least two essential domains, an upstream domain located at the 5' boundary near position -150 and a core promoter domain around the site of transcription initiation at +1. The upstream domain augments transcription in vitro but is not absolutely required. Maintenance of correct spacing between the two domains is critical. The in vitro analysis agrees well with prior in vivo analysis and it appears that the yeast promoter has a structure very similar to that of vertebrate ribosomal gene promoters.

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Year:  1992        PMID: 1741253      PMCID: PMC310367          DOI: 10.1093/nar/20.2.279

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  An RNA polymerase I termination site can stimulate the adjacent ribosomal gene promoter by two distinct mechanisms in Xenopus laevis.

Authors:  B McStay; R H Reeder
Journal:  Genes Dev       Date:  1990-07       Impact factor: 11.361

2.  The mouse ribosomal DNA promoter has more stringent requirements in vivo than in vitro.

Authors:  S L Henderson; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  1990-09       Impact factor: 4.272

3.  Analysis of clustered point mutations in the human ribosomal RNA gene promoter by transient expression in vivo.

Authors:  M H Jones; R M Learned; R Tjian
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

4.  Upstream domains of the Xenopus laevis rDNA promoter are revealed in microinjected oocytes.

Authors:  J Windle; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  1986-04       Impact factor: 4.272

5.  Linker scanner mutagenesis of the Xenopus laevis ribosomal gene promoter.

Authors:  R H Reeder; D Pennock; B McStay; J Roan; E Tolentino; P Walker
Journal:  Nucleic Acids Res       Date:  1987-09-25       Impact factor: 16.971

6.  Regions upstream from the core promoter of the rat ribosomal gene are required for the formation of a stable transcription initiation complex by RNA polymerase I in vitro.

Authors:  B Cassidy; R Haglund; L I Rothblum
Journal:  Biochim Biophys Acta       Date:  1987-07-14

7.  A complex control region of the mouse rRNA gene directs accurate initiation by RNA polymerase I.

Authors:  K G Miller; J Tower; B Sollner-Webb
Journal:  Mol Cell Biol       Date:  1985-03       Impact factor: 4.272

8.  The yeast RNA polymerase I promoter: ribosomal DNA sequences involved in transcription initiation and complex formation in vitro.

Authors:  T Kulkens; D L Riggs; J D Heck; R J Planta; M Nomura
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

9.  The major promoter element of rRNA transcription in yeast lies 2 kb upstream.

Authors:  E A Elion; J R Warner
Journal:  Cell       Date:  1984-12       Impact factor: 41.582

10.  Linker scanning of the yeast RNA polymerase I promoter.

Authors:  W Musters; J Knol; P Maas; A F Dekker; H van Heerikhuizen; R J Planta
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

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  20 in total

1.  Hmo1 is required for TOR-dependent regulation of ribosomal protein gene transcription.

Authors:  Axel B Berger; Laurence Decourty; Gwenaël Badis; Ulf Nehrbass; Alain Jacquier; Olivier Gadal
Journal:  Mol Cell Biol       Date:  2007-09-17       Impact factor: 4.272

2.  The DNA supercoiling architecture induced by the transcription factor xUBF requires three of its five HMG-boxes.

Authors:  V Y Stefanovsky; D P Bazett-Jones; G Pelletier; T Moss
Journal:  Nucleic Acids Res       Date:  1996-08-15       Impact factor: 16.971

3.  RNA polymerase switch in transcription of yeast rDNA: role of transcription factor UAF (upstream activation factor) in silencing rDNA transcription by RNA polymerase II.

Authors:  L Vu; I Siddiqi; B S Lee; C A Josaitis; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

4.  Expression of rRNA genes and nucleolus formation at ectopic chromosomal sites in the yeast Saccharomyces cerevisiae.

Authors:  Melanie L Oakes; Katsuki Johzuka; Loan Vu; Kristilyn Eliason; Masayasu Nomura
Journal:  Mol Cell Biol       Date:  2006-08       Impact factor: 4.272

5.  A novel 66-kilodalton protein complexes with Rrn6, Rrn7, and TATA-binding protein to promote polymerase I transcription initiation in Saccharomyces cerevisiae.

Authors:  C W Lin; B Moorefield; J Payne; P Aprikian; K Mitomo; R H Reeder
Journal:  Mol Cell Biol       Date:  1996-11       Impact factor: 4.272

6.  xUBF, an RNA polymerase I transcription factor, binds crossover DNA with low sequence specificity.

Authors:  C H Hu; B McStay; S W Jeong; R H Reeder
Journal:  Mol Cell Biol       Date:  1994-05       Impact factor: 4.272

7.  The PARP and rRNA promoters of Trypanosoma brucei are composed of dissimilar sequence elements that are functionally interchangeable.

Authors:  L Janz; C Clayton
Journal:  Mol Cell Biol       Date:  1994-09       Impact factor: 4.272

8.  Molecular Topology of RNA Polymerase I Upstream Activation Factor.

Authors:  Bruce A Knutson; Marissa L Smith; Alana E Belkevich; Aula M Fakhouri
Journal:  Mol Cell Biol       Date:  2020-06-15       Impact factor: 4.272

9.  The yeast alpha 2 protein can repress transcription by RNA polymerases I and II but not III.

Authors:  B M Herschbach; A D Johnson
Journal:  Mol Cell Biol       Date:  1993-07       Impact factor: 4.272

10.  In vitro definition of the yeast RNA polymerase I enhancer.

Authors:  M C Schultz; S Y Choe; R H Reeder
Journal:  Mol Cell Biol       Date:  1993-05       Impact factor: 4.272

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