Literature DB >> 17408790

Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization.

Sebastian Lücker1, Doris Steger, Kasper Urup Kjeldsen, Barbara J MacGregor, Michael Wagner, Alexander Loy.   

Abstract

An updated dataset of in silico specificities for 54 previously published 16S rRNA-targeted oligonucleotides was assembled to provide guidance for reliable fluorescence in situ hybridization (FISH) analysis of sulfate-reducing bacteria. Additionally, six new FISH probes were developed for major deltaproteobacterial taxa, including a probe trio targeting most Deltaproteobacteria and Gemmatimonadetes.

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Year:  2007        PMID： 17408790     DOI： 10.1016/j.mimet.2007.02.009

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN： 0167-7012            Impact factor:   2.363


  24 in total

1.  Abundance, diversity and activity of sulfate-reducing prokaryotes in heavy metal-contaminated sediment from a salt marsh in the Medway Estuary (UK).

Authors:  Laurent Quillet; Ludovic Besaury; Milka Popova; Sandrine Paissé; Julien Deloffre; Baghdad Ouddane
Journal:  Mar Biotechnol (NY)       Date:  2011-11-30       Impact factor: 3.619

2.  Quantification of Tinto River sediment microbial communities: importance of sulfate-reducing bacteria and their role in attenuating acid mine drainage.

Authors:  Irene Sánchez-Andrea; Katrin Knittel; Rudolf Amann; Ricardo Amils; José Luis Sanz
Journal:  Appl Environ Microbiol       Date:  2012-04-27       Impact factor: 4.792

3.  Accessing marine protists from the anoxic Cariaco Basin.

Authors:  V Edgcomb; W Orsi; G T Taylor; P Vdacny; C Taylor; P Suarez; S Epstein
Journal:  ISME J       Date:  2011-03-10       Impact factor: 10.302

4.  The phylogenetic structure of microbial biofilms and free-living bacteria in a small stream.

Authors:  Lenka Brablcová; Iva Buriánková; Pavlína Badurová; Martin Rulík
Journal:  Folia Microbiol (Praha)       Date:  2012-11-07       Impact factor: 2.099

5.  Stratified microbial structure and activity in sulfide- and methane-producing anaerobic sewer biofilms.

Authors:  Jing Sun; Shihu Hu; Keshab Raj Sharma; Bing-Jie Ni; Zhiguo Yuan
Journal:  Appl Environ Microbiol       Date:  2014-09-05       Impact factor: 4.792

6.  Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia.

Authors:  Roland Hatzenpichler; Stephanie A Connon; Danielle Goudeau; Rex R Malmstrom; Tanja Woyke; Victoria J Orphan
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

7.  Assessing the Diversity of Benthic Sulfate-Reducing Microorganisms in Northwestern Gulf of Mexico by Illumina Sequencing of dsrB Gene.

Authors:  Ma Fernanda Sánchez-Soto; Daniel Cerqueda-García; Rocío J Alcántara-Hernández; Luisa I Falcón; Daniel Pech; Flor Árcega-Cabrera; Ma Leopoldina Aguirre-Macedo; José Q García-Maldonado
Journal:  Microb Ecol       Date:  2020-11-09       Impact factor: 4.552

8.  Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution.

Authors:  V P Edgcomb; S A Breglia; N Yubuki; D Beaudoin; D J Patterson; B S Leander; J M Bernhard
Journal:  ISME J       Date:  2010-08-05       Impact factor: 10.302

9.  Electrogenic sulfide oxidation mediated by cable bacteria stimulates sulfate reduction in freshwater sediments.

Authors:  Tobias Sandfeld; Ugo Marzocchi; Caitlin Petro; Andreas Schramm; Nils Risgaard-Petersen
Journal:  ISME J       Date:  2020-02-10       Impact factor: 10.302

10.  Denitrification likely catalyzed by endobionts in an allogromiid foraminifer.

Authors:  Joan M Bernhard; Virginia P Edgcomb; Karen L Casciotti; Matthew R McIlvin; David J Beaudoin
Journal:  ISME J       Date:  2011-12-01       Impact factor: 10.302
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