Literature DB >> 17407160

Principles of nanostructure design with protein building blocks.

Chung-Jung Tsai1, Jie Zheng, David Zanuy, Nurit Haspel, Haim Wolfson, Carlos Alemán, Ruth Nussinov.   

Abstract

Currently there is increasing interest in nanostructures and their design. Nanostructure design involves the ability to predictably manipulate the properties of the self-assembly of autonomous units. Autonomous units have preferred conformational states. The units can be synthetic material science-based or derived from functional biological macromolecules. Autonomous biological building blocks with available structures provide an extremely rich and useful resource for design. For proteins, the structural databases contain large libraries of protein molecules and their building blocks with a range of shapes, surfaces, and chemical properties. The introduction of engineered synthetic residues or short peptides into these can expand the available chemical space and enhance the desired properties. Here we focus on the principles of nanostructure design with protein building blocks. 2007 Wiley-Liss, Inc.

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Year:  2007        PMID: 17407160     DOI: 10.1002/prot.21413

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  14 in total

1.  Minimalist design of water-soluble cross-beta architecture.

Authors:  Matthew Biancalana; Koki Makabe; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-04       Impact factor: 11.205

2.  Structural analysis of a beta-helical protein motif stabilized by targeted replacements with conformationally constrained amino acids.

Authors:  Gema Ballano; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-09-24       Impact factor: 2.991

3.  The energy landscape of a selective tumor-homing pentapeptide.

Authors:  David Zanuy; Alejandra Flores-Ortega; Jordi Casanovas; David Curcó; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-06-28       Impact factor: 2.991

4.  Stimuli-responsive properties of peptide-based copolymers studied via directional growth of self-assembled patterns on solid substrate.

Authors:  Roman Sheparovych; Yuri Roiter; Jiyuan Yang; Jindřich Kopeček; Sergiy Minko
Journal:  Biomacromolecules       Date:  2009-06-17       Impact factor: 6.988

5.  Conformational preferences of beta- and gamma-aminated proline analogues.

Authors:  Alejandra Flores-Ortega; Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Phys Chem B       Date:  2008-10-09       Impact factor: 2.991

6.  Protein segments with conformationally restricted amino acids can control supramolecular organization at the nanoscale.

Authors:  David Zanuy; Gema Ballano; Ana I Jiménez; Jordi Casanovas; Nurit Haspel; Carlos Cativiela; David Curcó; Ruth Nussinov; Carlos Alemán
Journal:  J Chem Inf Model       Date:  2009-07       Impact factor: 4.956

7.  Computational validation of protein nanotubes.

Authors:  Idit Buch; Bernard R Brooks; Haim J Wolfson; Ruth Nussinov
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

8.  Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension.

Authors:  James T MacDonald; Burak V Kabasakal; David Godding; Sebastian Kraatz; Louie Henderson; James Barber; Paul S Freemont; James W Murray
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-29       Impact factor: 11.205

9.  Mutational analysis and allosteric effects in the HIV-1 capsid protein carboxyl-terminal dimerization domain.

Authors:  Xiang Yu; Qiuming Wang; Jui-Chen Yang; Idit Buch; Chung-Jung Tsai; Buyong Ma; Stephen Z D Cheng; Ruth Nussinov; Jie Zheng
Journal:  Biomacromolecules       Date:  2009-02-09       Impact factor: 6.988

10.  Structure and Thermal Stability of wtRop and RM6 Proteins through All-Atom Molecular Dynamics Simulations and Experiments.

Authors:  Maria Arnittali; Anastassia N Rissanou; Maria Amprazi; Michael Kokkinidis; Vagelis Harmandaris
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

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