Literature DB >> 17406568

Amplification of 5' end cDNA with 'new RACE'.

Elizabeth Scotto-Lavino1, Guangwei Du, Michael A Frohman.   

Abstract

'New RACE' (rapid amplification of cDNA ends) PCR is a method for obtaining full-length cDNA for mRNA for which only part of the sequence is known. Starting with cellular mRNA, PCR is used to amplify regions between the known parts of the sequence and nonspecific tags at the ends of the cDNA. In 'new RACE', an anchor is ligated to the 5' end of the mRNA before reverse transcription, resulting in the selective production of full-length 5' cDNA ends. Although 'new RACE' can also be used to amplify 3' ends, only the protocol for obtaining 5' ends is presented here. This protocol can be completed in 1-3 days.

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Year:  2006        PMID: 17406568     DOI: 10.1038/nprot.2006.479

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  18 in total

1.  Isolation of the 5'-end of plant genes from genomic DNA by TATA-box-based degenerate primers.

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Journal:  Mol Biotechnol       Date:  2011-02       Impact factor: 2.695

2.  Novel 5'/3'RACE Method for Amplification and Determination of Single-Stranded RNAs Through Double-Stranded RNA (dsRNA) Intermediates.

Authors:  Péter Pankovics; Ákos Boros; Gábor Reuter
Journal:  Mol Biotechnol       Date:  2015-12       Impact factor: 2.695

3.  Mechanism of transcriptional activation by Pseudomonas aeruginosa ExsA.

Authors:  Christopher A Vakulskas; Keith M Brady; Timothy L Yahr
Journal:  J Bacteriol       Date:  2009-08-28       Impact factor: 3.490

4.  Microprocessor Recruitment to Elongating RNA Polymerase II Is Required for Differential Expression of MicroRNAs.

Authors:  Victoria A Church; Sigal Pressman; Mamiko Isaji; Mary Truscott; Nihal Terzi Cizmecioglu; Stephen Buratowski; Maxim V Frolov; Richard W Carthew
Journal:  Cell Rep       Date:  2017-09-26       Impact factor: 9.423

5.  Focused transcription from the human CR2/CD21 core promoter is regulated by synergistic activity of TATA and Initiator elements in mature B cells.

Authors:  Rhonda L Taylor; Mark N Cruickshank; Mahdad Karimi; Han Leng Ng; Elizabeth Quail; Kenneth M Kaufman; John B Harley; Lawrence J Abraham; Betty P Tsao; Susan A Boackle; Daniela Ulgiati
Journal:  Cell Mol Immunol       Date:  2015-02-02       Impact factor: 11.530

6.  ESR2 Is Essential for Gonadotropin-Induced Kiss1 Expression in Granulosa Cells.

Authors:  V Praveen Chakravarthi; Vincentaben Khristi; Subhra Ghosh; Sireesha Yerrathota; Eddie Dai; Katherine F Roby; Michael W Wolfe; M A Karim Rumi
Journal:  Endocrinology       Date:  2018-11-01       Impact factor: 4.736

Review 7.  Analysis of RNA polymerase-promoter complex formation.

Authors:  Wilma Ross; Richard L Gourse
Journal:  Methods       Date:  2008-10-24       Impact factor: 3.608

8.  Genome-wide identification of transcript start and end sites by transcript isoform sequencing.

Authors:  Vicent Pelechano; Wu Wei; Petra Jakob; Lars M Steinmetz
Journal:  Nat Protoc       Date:  2014-06-26       Impact factor: 13.491

9.  The AbrB2 autorepressor, expressed from an atypical promoter, represses the hydrogenase operon to regulate hydrogen production in Synechocystis strain PCC6803.

Authors:  Jérémy Dutheil; Panatda Saenkham; Samer Sakr; Christophe Leplat; Marcia Ortega-Ramos; Hervé Bottin; Laurent Cournac; Corinne Cassier-Chauvat; Franck Chauvat
Journal:  J Bacteriol       Date:  2012-08-03       Impact factor: 3.490

10.  Localization and divergent profiles of estrogen receptors and aromatase in the vocal and auditory networks of a fish with alternative mating tactics.

Authors:  Daniel J Fergus; Andrew H Bass
Journal:  J Comp Neurol       Date:  2013-08-15       Impact factor: 3.215

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