Literature DB >> 17404750

Replication origin plasticity, Taylor-made: inhibition vs recruitment of origins under conditions of replication stress.

David M Gilbert1.   

Abstract

Among his many contributions to the field of chromosome structure and dynamics, J. Herbert Taylor showed that eukaryotic cells have many more potential replication origins than they use, which they can recruit when replication forks are slowed to complete S-phase in a timely fashion. Thirty years later, his findings raise an important but largely overlooked paradox. Although new data have confirmed his results, a larger body of data has revealed that slowing replication forks activates an S-phase checkpoint cascade that inhibits initiation from unfired origins until the stress is relieved. In this paper, in celebration of Taylor's work published in Chromosoma 30 years ago, I draw attention to this paradox and offer some plausible models to explain how replication stress can both inhibit and recruit new origins. I hope that this essay will stimulate further experimentation into the basis of Taylor's original findings.

Mesh:

Year:  2007        PMID: 17404750     DOI: 10.1007/s00412-007-0105-9

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  30 in total

1.  Temporally coordinated assembly and disassembly of replication factories in the absence of DNA synthesis.

Authors:  D S Dimitrova; D M Gilbert
Journal:  Nat Cell Biol       Date:  2000-10       Impact factor: 28.824

2.  ORC and the intra-S-phase checkpoint: a threshold regulates Rad53p activation in S phase.

Authors:  Kenji Shimada; Philippe Pasero; Susan M Gasser
Journal:  Genes Dev       Date:  2002-12-15       Impact factor: 11.361

Review 3.  Signaling network model of chromatin.

Authors:  Stuart L Schreiber; Bradley E Bernstein
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

4.  Visualization of altered replication dynamics after DNA damage in human cells.

Authors:  Catherine J Merrick; Dean Jackson; John F X Diffley
Journal:  J Biol Chem       Date:  2004-02-23       Impact factor: 5.157

Review 5.  In search of the holy replicator.

Authors:  David M Gilbert
Journal:  Nat Rev Mol Cell Biol       Date:  2004-10       Impact factor: 94.444

6.  Evidence for a four micron replication unit in CHO cells.

Authors:  J H Taylor; J C Hozier
Journal:  Chromosoma       Date:  1976-09-24       Impact factor: 4.316

7.  Replication of DNA in mammalian chromosomes. II. Kinetics of 3H-thymidine incorporation and the isolation and partial characterization of labeled subunits at the growing point.

Authors:  J H Taylor; A G Adams; M P Kurek
Journal:  Chromosoma       Date:  1973-04-27       Impact factor: 4.316

8.  Replicating DNA molecules from eggs of Drosophila melanogaster.

Authors:  D R Wolstenholme
Journal:  Chromosoma       Date:  1973-07-23       Impact factor: 4.316

9.  The Chinese hamster dihydrofolate reductase replication origin decision point follows activation of transcription and suppresses initiation of replication within transcription units.

Authors:  Takayo Sasaki; Sunita Ramanathan; Yukiko Okuno; Chiharu Kumagai; Seemab S Shaikh; David M Gilbert
Journal:  Mol Cell Biol       Date:  2006-02       Impact factor: 4.272

Review 10.  The interpretation of morphogen gradients.

Authors:  Hilary L Ashe; James Briscoe
Journal:  Development       Date:  2006-02       Impact factor: 6.868

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  37 in total

1.  Genome-scale analysis of replication timing: from bench to bioinformatics.

Authors:  Tyrone Ryba; Dana Battaglia; Benjamin D Pope; Ichiro Hiratani; David M Gilbert
Journal:  Nat Protoc       Date:  2011-06-02       Impact factor: 13.491

2.  Chk1 promotes replication fork progression by controlling replication initiation.

Authors:  Eva Petermann; Mick Woodcock; Thomas Helleday
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-30       Impact factor: 11.205

3.  Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription.

Authors:  Larry D Mesner; Veena Valsakumar; Neerja Karnani; Anindya Dutta; Joyce L Hamlin; Stefan Bekiranov
Journal:  Genome Res       Date:  2010-12-20       Impact factor: 9.043

Review 4.  Eukaryotic DNA replication origins: many choices for appropriate answers.

Authors:  Marcel Méchali
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10       Impact factor: 94.444

5.  Activation of new replication foci under conditions of replication stress.

Authors:  P Rybak; A Waligórska; Ł Bujnowicz; A Hoang; J W Dobrucki
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 6.  Global regulation of genome duplication in eukaryotes: an overview from the epifluorescence microscope.

Authors:  John Herrick; Aaron Bensimon
Journal:  Chromosoma       Date:  2008-01-16       Impact factor: 4.316

7.  Defining replication origin efficiency using DNA fiber assays.

Authors:  Sandie Tuduri; Hélène Tourrière; Philippe Pasero
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

8.  Foreword: eukaryotic DNA replication: is time of the essence?

Authors:  Marie-Noëlle Prioleau; Dean A Jackson
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

9.  Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription.

Authors:  Sandie Tuduri; Laure Crabbé; Chiara Conti; Hélène Tourrière; Heidi Holtgreve-Grez; Anna Jauch; Véronique Pantesco; John De Vos; Aubin Thomas; Charles Theillet; Yves Pommier; Jamal Tazi; Arnaud Coquelle; Philippe Pasero
Journal:  Nat Cell Biol       Date:  2009-10-18       Impact factor: 28.824

10.  Analysis of replication factories in human cells by super-resolution light microscopy.

Authors:  Zoltan Cseresnyes; Ulf Schwarz; Catherine M Green
Journal:  BMC Cell Biol       Date:  2009-12-16       Impact factor: 4.241

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