Literature DB >> 17396181

A strategy for predicting the crystal structures of flexible molecules: the polymorphism of phenobarbital.

G M Day1, W D S Motherwell, W Jones.   

Abstract

A computational exploration of the low energy crystal structures of the pharmaceutical molecule phenobarbital is presented as a test of an approach for the crystal structure prediction of flexible molecules. Traditional transferable force field methods of modelling flexible molecules are unreliable for the level of accuracy required in crystal structure prediction and we outline a strategy for improving the evaluation of relative energies of large sets of crystal structures. The approach involves treating the molecule as a set of linked rigid units, whose conformational energy is expressed as a function of the relative orientations of the rigid groups. The conformational energy is calculated by electronic structure methods and the intermolecular interactions using an atomic multipole description of electrostatics. A key consideration in our approach is the scalability to more typical pharmaceutical molecules of higher molecular weight with many more atoms and degrees of flexibility. Based on our calculations, crystal structures are proposed for the as-yet uncharacterised forms IV and V, as well as further polymorphs of phenobarbital.

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Year:  2007        PMID: 17396181     DOI: 10.1039/b612190j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  11 in total

1.  Theoretical explanation for the pharmaceutical incompatibility through the cooperativity effect of the drug-drug intermolecular interactions in the phenobarbital∙∙∙paracetamol∙∙∙H2O complex.

Authors:  Fei-Peng Zhai; Hong-En Wei; Yi Liu; Feng-Yun Hu
Journal:  J Mol Model       Date:  2019-06-07       Impact factor: 1.810

2.  Polymorphism in phenobarbital: discovery of a new polymorph and crystal structure of elusive form V.

Authors:  Saikat Roy; N Rajesh Goud; Adam J Matzger
Journal:  Chem Commun (Camb)       Date:  2016-03-21       Impact factor: 6.222

3.  Close intramolecular sulfur-oxygen contacts: modified force field parameters for improved conformation generation.

Authors:  Dmitry Lupyan; Yuriy A Abramov; Woody Sherman
Journal:  J Comput Aided Mol Des       Date:  2012-10-06       Impact factor: 3.686

4.  Theoretical research on cage-like furazan-based energetic compounds and its derivatives.

Authors:  Yan Huang; Le-Wu Zhan; Qian Zhang; Jing Hou; Bin-Dong Li
Journal:  J Mol Model       Date:  2021-08-10       Impact factor: 1.810

5.  Crystal structure prediction of flexible molecules using parallel genetic algorithms with a standard force field.

Authors:  Seonah Kim; Anita M Orendt; Marta B Ferraro; Julio C Facelli
Journal:  J Comput Chem       Date:  2009-10       Impact factor: 3.376

6.  Towards crystal structure prediction of complex organic compounds--a report on the fifth blind test.

Authors:  David A Bardwell; Claire S Adjiman; Yelena A Arnautova; Ekaterina Bartashevich; Stephan X M Boerrigter; Doris E Braun; Aurora J Cruz-Cabeza; Graeme M Day; Raffaele G Della Valle; Gautam R Desiraju; Bouke P van Eijck; Julio C Facelli; Marta B Ferraro; Damian Grillo; Matthew Habgood; Detlef W M Hofmann; Fridolin Hofmann; K V Jovan Jose; Panagiotis G Karamertzanis; Andrei V Kazantsev; John Kendrick; Liudmila N Kuleshova; Frank J J Leusen; Andrey V Maleev; Alston J Misquitta; Sharmarke Mohamed; Richard J Needs; Marcus A Neumann; Denis Nikylov; Anita M Orendt; Rumpa Pal; Constantinos C Pantelides; Chris J Pickard; Louise S Price; Sarah L Price; Harold A Scheraga; Jacco van de Streek; Tejender S Thakur; Siddharth Tiwari; Elisabetta Venuti; Ilia K Zhitkov
Journal:  Acta Crystallogr B       Date:  2011-11-17

7.  Specific energy contributions from competing hydrogen-bonded structures in six polymorphs of phenobarbital.

Authors:  Thomas Gelbrich; Doris E Braun; Ulrich J Griesser
Journal:  Chem Cent J       Date:  2016-02-22       Impact factor: 4.215

8.  Convergence Properties of Crystal Structure Prediction by Quasi-Random Sampling.

Authors:  David H Case; Josh E Campbell; Peter J Bygrave; Graeme M Day
Journal:  J Chem Theory Comput       Date:  2016-01-13       Impact factor: 6.006

9.  Ab initio random structure searching of organic molecular solids: assessment and validation against experimental data.

Authors:  Miri Zilka; Dmytro V Dudenko; Colan E Hughes; P Andrew Williams; Simone Sturniolo; W Trent Franks; Chris J Pickard; Jonathan R Yates; Kenneth D M Harris; Steven P Brown
Journal:  Phys Chem Chem Phys       Date:  2017-10-04       Impact factor: 3.676

Review 10.  Can computed crystal energy landscapes help understand pharmaceutical solids?

Authors:  Sarah L Price; Doris E Braun; Susan M Reutzel-Edens
Journal:  Chem Commun (Camb)       Date:  2016-04-12       Impact factor: 6.222

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