Literature DB >> 17395090

Support vector machines approach for predicting druggable proteins: recent progress in its exploration and investigation of its usefulness.

Lian Yi Han1, Chan Juan Zheng, Bin Xie, Jia Jia, Xiao Hua Ma, Feng Zhu, Hong Huang Lin, Xin Chen, Yu Zong Chen.   

Abstract

Identification and validation of viable targets is an important first step in drug discovery and new methods, and integrated approaches are continuously explored to improve the discovery rate and exploration of new drug targets. An in silico machine learning method, support vector machines, has been explored as a new method for predicting druggable proteins from amino acid sequence independent of sequence similarity, thereby facilitating the prediction of druggable proteins that exhibit no or low homology to known targets.

Mesh:

Year:  2007        PMID: 17395090     DOI: 10.1016/j.drudis.2007.02.015

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  14 in total

1.  Structural models in the assessment of protein druggability based on HTS data.

Authors:  Anvita Gupta; Arun Kumar Gupta; Kothandaraman Seshadri
Journal:  J Comput Aided Mol Des       Date:  2009-05-29       Impact factor: 3.686

Review 2.  Mechanisms of drug combinations: interaction and network perspectives.

Authors:  Jia Jia; Feng Zhu; Xiaohua Ma; Zhiwei Cao; Zhiwei W Cao; Yixue Li; Yixue X Li; Yu Zong Chen
Journal:  Nat Rev Drug Discov       Date:  2009-02       Impact factor: 84.694

3.  Update of TTD: Therapeutic Target Database.

Authors:  Feng Zhu; BuCong Han; Pankaj Kumar; XiangHui Liu; XiaoHua Ma; Xiaona Wei; Lu Huang; YangFan Guo; LianYi Han; ChanJuan Zheng; YuZong Chen
Journal:  Nucleic Acids Res       Date:  2009-11-20       Impact factor: 16.971

4.  Multi-algorithm and multi-model based drug target prediction and web server.

Authors:  Ying-tao Liu; Yi Li; Zi-fu Huang; Zhi-jian Xu; Zhuo Yang; Zhu-xi Chen; Kai-xian Chen; Ji-ye Shi; Wei-liang Zhu
Journal:  Acta Pharmacol Sin       Date:  2014-02-03       Impact factor: 6.150

5.  Cell cycle kinases predicted from conserved biophysical properties.

Authors:  Kazimierz O Wrzeszczynski; Burkhard Rost
Journal:  Proteins       Date:  2009-02-15

6.  UniDrug-target: a computational tool to identify unique drug targets in pathogenic bacteria.

Authors:  Sree Krishna Chanumolu; Chittaranjan Rout; Rajinder S Chauhan
Journal:  PLoS One       Date:  2012-03-14       Impact factor: 3.240

7.  Constructing and Validating High-Performance MIEC-SVM Models in Virtual Screening for Kinases: A Better Way for Actives Discovery.

Authors:  Huiyong Sun; Peichen Pan; Sheng Tian; Lei Xu; Xiaotian Kong; Youyong Li; Tingjun Hou
Journal:  Sci Rep       Date:  2016-04-22       Impact factor: 4.379

8.  Assessing the druggability of protein-protein interactions by a supervised machine-learning method.

Authors:  Nobuyoshi Sugaya; Kazuyoshi Ikeda
Journal:  BMC Bioinformatics       Date:  2009-08-25       Impact factor: 3.169

9.  Large-scale reverse docking profiles and their applications.

Authors:  Minho Lee; Dongsup Kim
Journal:  BMC Bioinformatics       Date:  2012-12-13       Impact factor: 3.169

10.  Prediction of potential drug targets based on simple sequence properties.

Authors:  Qingliang Li; Luhua Lai
Journal:  BMC Bioinformatics       Date:  2007-09-20       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.