Literature DB >> 17392799

Recommendations of the 2006 Human Variome Project meeting.

Richard G H Cotton1, William Appelbe, Arleen D Auerbach, Kevin Becker, Walter Bodmer, D Joe Boone, Victor Boulyjenkov, Samir Brahmachari, Lawrence Brody, Anthony Brookes, Alastair F Brown, Peter Byers, Jose Maria Cantu, Jean-Jacques Cassiman, Mireille Claustres, Patrick Concannon, Richard G H Cotton1, Johan T den Dunnen, Paul Flicek, Richard Gibbs, Judith Hall, Julia Hasler, Michael Katz, Pui-Yan Kwok, Sandrine Laradi, Annika Lindblom, Donna Maglott, Steven Marsh, Collen Muto Masimirembwa, Shinsei Minoshima, Ana Maria Oller de Ramirez, Roberta Pagon, Raj Ramesar, David Ravine, Sue Richards, David Rimoin, Huijun Z Ring, Charles R Scriver, Stephen Sherry, Nobuyoshi Shimizu, Lincoln Stein, Ghazi Omar Tadmouri, Graham Taylor, Michael Watson.   

Abstract

Lists of variations in genomic DNA and their effects have been kept for some time and have been used in diagnostics and research. Although these lists have been carefully gathered and curated, there has been little standardization and coordination, complicating their use. Given the myriad possible variations in the estimated 24,000 genes in the human genome, it would be useful to have standard criteria for databases of variation. Incomplete collection and ascertainment of variants demonstrates a need for a universally accessible system. These and other problems led to the World Heath Organization-cosponsored meeting on June 20-23, 2006 in Melbourne, Australia, which launched the Human Variome Project. This meeting addressed all areas of human genetics relevant to collection of information on variation and its effects. Members of each of eight sessions (the clinic and phenotype, the diagnostic laboratory, the research laboratory, curation and collection, informatics, relevance to the emerging world, integration and federation and funding and sustainability) developed a number of recommendations that were then organized into a total of 96 recommendations to act as a foundation for future work worldwide. Here we summarize the background of the project, the meeting and its recommendations.

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Year:  2007        PMID: 17392799     DOI: 10.1038/ng2024

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  25 in total

1.  Call for participation in the neurogenetics consortium within the Human Variome Project.

Authors:  Andrea Haworth; Lars Bertram; Paola Carrera; Joanna L Elson; Corey D Braastad; Diane W Cox; Marc Cruts; Johann T den Dunnen; Matthew J Farrer; John K Fink; Sherifa A Hamed; Henry Houlden; Dennis R Johnson; Karen Nuytemans; Francesc Palau; Dipa L Raja Rayan; Peter N Robinson; Antonio Salas; Birgitt Schüle; Mary G Sweeney; Michael O Woods; Jorge Amigo; Richard G H Cotton; Maria-Jesus Sobrido
Journal:  Neurogenetics       Date:  2011-06-01       Impact factor: 2.660

2.  Mutation (variation) databases and registries: a rationale for coordination of efforts.

Authors:  Arleen D Auerbach; John Burn; Jean-Jacques Cassiman; Mireille Claustres; Richard G H Cotton; Garry Cutting; Johan T den Dunnen; Mona El-Ruby; Aida Falcon Vargas; Marc S Greenblatt; Finlay Macrae; Yoichi Matsubara; David L Rimoin; Mauno Vihinen; Christine Van Broeckhoven
Journal:  Nat Rev Genet       Date:  2011-10-25       Impact factor: 53.242

3.  Recommendations for locus-specific databases and their curation.

Authors:  R G H Cotton; A D Auerbach; J S Beckmann; O O Blumenfeld; A J Brookes; A F Brown; P Carrera; D W Cox; B Gottlieb; M S Greenblatt; P Hilbert; H Lehvaslaiho; P Liang; S Marsh; D W Nebert; S Povey; S Rossetti; C R Scriver; M Summar; D R Tolan; I C Verma; M Vihinen; J T den Dunnen
Journal:  Hum Mutat       Date:  2008-01       Impact factor: 4.878

Review 4.  The promise of whole-exome sequencing in medical genetics.

Authors:  Bahareh Rabbani; Mustafa Tekin; Nejat Mahdieh
Journal:  J Hum Genet       Date:  2013-11-07       Impact factor: 3.172

5.  Genetic counseling in southern Iran: consanguinity and reason for referral.

Authors:  Mohsen Fathzadeh; Mohammad Ali Babaie Bigi; Masood Bazrgar; Majid Yavarian; Hamid Reza Tabatabaee; Seyed Mohammad Akrami
Journal:  J Genet Couns       Date:  2008-06-13       Impact factor: 2.537

6.  Molecular epidemiology of citrullinemia type I in a risk region of Argentina: a first step to preconception heterozygote detection.

Authors:  Laura E Laróvere; Silene M Silvera Ruiz; Celia J Angaroni; Raquel Dodelson de Kremer
Journal:  JIMD Rep       Date:  2012-02-26

7.  Biomarker Validation for Aging: Lessons from mtDNA Heteroplasmy Analyses in Early Cancer Detection.

Authors:  Peter E Barker; Mahadev Murthy
Journal:  Biomark Insights       Date:  2009-11-27

8.  Locus-specific databases and recommendations to strengthen their contribution to the classification of variants in cancer susceptibility genes.

Authors:  Marc S Greenblatt; Lawrence C Brody; William D Foulkes; Maurizio Genuardi; Robert M W Hofstra; Magali Olivier; Sharon E Plon; Rolf H Sijmons; Olga Sinilnikova; Amanda B Spurdle
Journal:  Hum Mutat       Date:  2008-11       Impact factor: 4.878

9.  GENETICS. The Human Variome Project.

Authors:  Richard G H Cotton; Arleen D Auerbach; Myles Axton; Carol Isaacson Barash; Samuel F Berkovic; Anthony J Brookes; John Burn; Garry Cutting; Johan T den Dunnen; Paul Flicek; Nelson Freimer; Marc S Greenblatt; Heather J Howard; Michael Katz; Finlay A Macrae; Donna Maglott; Gabriela Möslein; Sue Povey; Rajkumar S Ramesar; Carolyn S Richards; Daniela Seminara; Timothy D Smith; María-Jesús Sobrido; Jan Helge Solbakk; Rudolph E Tanzi; Sean V Tavtigian; Graham R Taylor; Joji Utsunomiya; Michael Watson
Journal:  Science       Date:  2008-11-07       Impact factor: 47.728

10.  Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases.

Authors:  Muin J Khoury; Lars Bertram; Paolo Boffetta; Adam S Butterworth; Stephen J Chanock; Siobhan M Dolan; Isabel Fortier; Montserrat Garcia-Closas; Marta Gwinn; Julian P T Higgins; A Cecile J W Janssens; James Ostell; Ryan P Owen; Roberta A Pagon; Timothy R Rebbeck; Nathaniel Rothman; Jonine L Bernstein; Paul R Burton; Harry Campbell; Anand Chockalingam; Helena Furberg; Julian Little; Thomas R O'Brien; Daniela Seminara; Paolo Vineis; Deborah M Winn; Wei Yu; John P A Ioannidis
Journal:  Am J Epidemiol       Date:  2009-06-04       Impact factor: 4.897

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