Literature DB >> 17388621

Local composition in the vicinity of a protein molecule in an aqueous mixed solvent.

Ivan L Shulgin1, Eli Ruckenstein.   

Abstract

This paper is focused on the composition of a cosolvent in the vicinity of a protein surface (local composition) and its dependence on various factors. First, the Kirkwood-Buff theory of solution is used to obtain analytical expressions that connect the excess or deficit number of cosolvent and water molecules in the vicinity of a protein surface with experimentally measurable quantities such as the bulk concentration of the mixed solvent, the preferential binding parameter, and the molar volumes of water and cosolvent. Using these expressions, relations between the preferential binding parameter (at a molal concentration scale) and the above excesses (or deficits) are established. In addition, the obtained expressions are used to examine the effect of the nonideality of the water + cosolvent mixtures and of the molar volume of the cosolvent on the excess (or deficit) number of cosolvent molecules in the vicinity of the protein surface. It is shown that at least for the mixed solvents considered (water + urea and water + glucose) the nonideality of the mixed solvent is not an important factor in the local compositions around a protein molecule and that the main contribution is provided by the nonidealities of the protein-water and protein-cosolvent mixtures. Special attention is paid to urea as cosolvent, because urea is one of only a few compounds with a concentration at the protein surface larger than its concentration in the bulk. The composition dependence of the excess of urea around a protein molecule is calculated for the water + lysozyme + urea mixture at pH = 7.0 and 2.0. At pH = 7.0, the excess of urea becomes almost composition independent at high urea concentrations. Such independence could be explained by assuming that urea totally replaces water in some areas of the protein surface, whereas on the remaining areas of the protein surface both water and urea are present with concentration comparable to those in the bulk. The Schellman exchange model was used to relate the preferential binding parameter in water + lysozyme + urea mixtures to the urea concentration.

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Year:  2007        PMID: 17388621     DOI: 10.1021/jp066353n

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

Review 1.  Recent applications of Kirkwood-Buff theory to biological systems.

Authors:  Veronica Pierce; Myungshim Kang; Mahalaxmi Aburi; Samantha Weerasinghe; Paul E Smith
Journal:  Cell Biochem Biophys       Date:  2007-11-28       Impact factor: 2.194

2.  On the theory of solute solubility in mixed solvents.

Authors:  Paul E Smith; Robert M Mazo
Journal:  J Phys Chem B       Date:  2008-06-05       Impact factor: 2.991

3.  SANS/SAXS study of the BSA solvation properties in aqueous urea solutions via a global fit approach.

Authors:  Raffaele Sinibaldi; Maria Grazia Ortore; Francesco Spinozzi; Sérgio de Souza Funari; José Teixeira; Paolo Mariani
Journal:  Eur Biophys J       Date:  2008-03-26       Impact factor: 1.733

4.  A Pairwise Preferential Interaction Model for Understanding Peptide Aggregation.

Authors:  Myungshim Kang; Paul Edward Smith
Journal:  Int J Thermophys       Date:  2010-05-01       Impact factor: 1.608

  4 in total

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