Literature DB >> 1738591

A simple method for global sequence comparison.

E Pizzi1, M Attimonelli, S Liuni, C Frontali, C Saccone.   

Abstract

A simple method of sequence comparison, based on a correlation analysis of oligonucleotide frequency distributions, is here shown to be a reliable test of overall sequence similarity. The method does not involve sequence alignment procedures and permits the rapid screening of large amounts of sequence data. It identifies those sequences which deserve more careful analysis of sequence similarity at the level of resolution of the single nucleotide. It uses observed quantities only and does not involve the adoption of any theoretical model.

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Year:  1992        PMID： 1738591      PMCID： PMC310336          DOI： 10.1093/nar/20.1.131

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  18 in total

1.  Rapid and sensitive sequence comparison with FASTP and FASTA.

Authors:  W R Pearson
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

2.  Linguistics of nucleotide sequences: morphology and comparison of vocabularies.

Authors:  V Brendel; J S Beckmann; E N Trifonov
Journal:  J Biomol Struct Dyn       Date:  1986-08

3.  A measure of the similarity of sets of sequences not requiring sequence alignment.

Authors:  B E Blaisdell
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

4.  When does homology mean something else?

Authors:  R Lewin
Journal:  Science       Date:  1987-09-25       Impact factor: 47.728

5.  "Homology" in proteins and nucleic acids: a terminology muddle and a way out of it.

Authors:  G R Reeck; C de Haën; D C Teller; R F Doolittle; W M Fitch; R E Dickerson; P Chambon; A D McLachlan; E Margoliash; T H Jukes
Journal:  Cell       Date:  1987-08-28       Impact factor: 41.582

6.  "Homology" controversy.

Authors:  H K Kimelberg
Journal:  Science       Date:  1987-11-27       Impact factor: 47.728

7.  ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

Authors:  M Gouy; C Gautier; M Attimonelli; C Lanave; G di Paola
Journal:  Comput Appl Biosci       Date:  1985-09

8.  The effect of codon usage on the oligonucleotide composition of the E. coli genome and identification of over- and underrepresented sequences by Markov chain analysis.

Authors:  G J Phillips; J Arnold; R Ivarie
Journal:  Nucleic Acids Res       Date:  1987-03-25       Impact factor: 16.971

9.  Homologous nuclear genes encode cytoplasmic and mitochondrial glutamine synthetase in Drosophila melanogaster.

Authors:  R Caizzi; M P Bozzetti; C Caggese; F Ritossa
Journal:  J Mol Biol       Date:  1990-03-05       Impact factor: 5.469
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