Literature DB >> 17383222

Identification of small RNAs in diverse bacterial species.

Jonathan Livny1, Matthew K Waldor.   

Abstract

Small, non-coding bacterial RNAs (sRNAs) have been shown to regulate a plethora of biological processes. Up until recently, most sRNAs had been identified and characterized in E. coli. However, in the past few years, dozens of sRNAs have been discovered in a wide variety of bacterial species. Whereas numerous sRNAs have been isolated or detected through experimental approaches, most have been identified in predictive bioinformatic searches. Recently developed computational tools have greatly facilitated the efficient prediction of sRNAs in diverse species. Although the number of known sRNAs has dramatically increased in recent years, many challenges in the identification and characterization of sRNAs lie ahead.

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Year:  2007        PMID: 17383222     DOI: 10.1016/j.mib.2007.03.005

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  78 in total

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2.  Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae.

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Journal:  Mol Microbiol       Date:  2010-09-30       Impact factor: 3.501

5.  Distribution of centromere-like parS sites in bacteria: insights from comparative genomics.

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Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

Review 6.  Small toxic proteins and the antisense RNAs that repress them.

Authors:  Elizabeth M Fozo; Matthew R Hemm; Gisela Storz
Journal:  Microbiol Mol Biol Rev       Date:  2008-12       Impact factor: 11.056

7.  Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection.

Authors:  Errett C Hobbs; Jillian L Astarita; Gisela Storz
Journal:  J Bacteriol       Date:  2010-01       Impact factor: 3.490

Review 8.  Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity.

Authors:  Rotem Sorek; Pascale Cossart
Journal:  Nat Rev Genet       Date:  2009-11-24       Impact factor: 53.242

Review 9.  Regulatory RNAs in bacteria.

Authors:  Lauren S Waters; Gisela Storz
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  OCCAM: prediction of small ORFs in bacterial genomes by means of a target-decoy database approach and machine learning techniques.

Authors:  Fabio R Cerqueira; Ana Tereza Ribeiro Vasconcelos
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

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