Literature DB >> 17379352

Genomics and gene transcription kinetics in yeast.

José E Pérez-Ortín1, Paula M Alepuz, Joaquín Moreno.   

Abstract

As an adaptive response to new conditions, mRNA concentrations in eukaryotes are readjusted after any environmental change. Although mRNA concentrations can be modified by altering synthesis and/or degradation rates, the rapidity of the transition to a new concentration depends on the regulation of mRNA stability. There are several plausible transcriptional strategies following environmental change, reflecting different degrees of compromise between speed of response and cost of synthesis. The recent development of genomic techniques now enables researchers to determine simultaneously (either directly or indirectly) the transcription rates and mRNA half-lifes, together with mRNA concentrations, corresponding to all yeast genes. Such experiments could provide a new picture of the transcriptional response, by enabling us to characterize the kinetic strategies that are used by different genes under given environmental conditions.

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Year:  2007        PMID: 17379352     DOI: 10.1016/j.tig.2007.03.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  48 in total

1.  Antagonistic gene transcripts regulate adaptation to new growth environments.

Authors:  Bridget L Baumgartner; Matthew R Bennett; Michael Ferry; Tracy L Johnson; Lev S Tsimring; Jeff Hasty
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

Authors:  Ross D Alexander; J David Barrass; Beatriz Dichtl; Martin Kos; Tomasz Obtulowicz; Marie-Cecile Robert; Michal Koper; Iwona Karkusiewicz; Luisa Mariconti; David Tollervey; Bernhard Dichtl; Joanna Kufel; Edouard Bertrand; Jean D Beggs
Journal:  RNA       Date:  2010-10-25       Impact factor: 4.942

3.  The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast.

Authors:  José García-Martínez; Guillermo Ayala; Vicent Pelechano; Sebastián Chávez; Enrique Herrero; José E Pérez-Ortín
Journal:  Transcription       Date:  2012 Jan-Feb

4.  Homeostasis in the Central Dogma of molecular biology: the importance of mRNA instability.

Authors:  José E Pérez-Ortín; Vicente Tordera; Sebastián Chávez
Journal:  RNA Biol       Date:  2019-09-02       Impact factor: 4.652

5.  Negative feedback regulation of the yeast CTH1 and CTH2 mRNA binding proteins is required for adaptation to iron deficiency and iron supplementation.

Authors:  Mar Martínez-Pastor; Sandra V Vergara; Sergi Puig; Dennis J Thiele
Journal:  Mol Cell Biol       Date:  2013-03-25       Impact factor: 4.272

6.  Major role for mRNA stability in shaping the kinetics of gene induction.

Authors:  Ran Elkon; Eitan Zlotorynski; Karen I Zeller; Reuven Agami
Journal:  BMC Genomics       Date:  2010-04-21       Impact factor: 3.969

7.  The global dynamics of RNA stability orchestrates responses to cellular activation.

Authors:  Jack D Keene
Journal:  BMC Biol       Date:  2010-07-08       Impact factor: 7.431

8.  A complete set of nascent transcription rates for yeast genes.

Authors:  Vicent Pelechano; Sebastián Chávez; José E Pérez-Ortín
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

9.  Positive selection for elevated gene expression noise in yeast.

Authors:  Zhihua Zhang; Wenfeng Qian; Jianzhi Zhang
Journal:  Mol Syst Biol       Date:  2009-08-18       Impact factor: 11.429

10.  Dissection of a complex transcriptional response using genome-wide transcriptional modelling.

Authors:  Martino Barenco; Daniel Brewer; Efterpi Papouli; Daniela Tomescu; Robin Callard; Jaroslav Stark; Michael Hubank
Journal:  Mol Syst Biol       Date:  2009-11-17       Impact factor: 11.429

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