Literature DB >> 17378565

Base-dependent electron photodetachment from negatively charged DNA strands upon 260-nm laser irradiation.

Valérie Gabelica1, Frédéric Rosu, Thibault Tabarin, Catherine Kinet, Rodolphe Antoine, Michel Broyer, Edwin De Pauw, Philippe Dugourd.   

Abstract

DNA multiply charged anions stored in a quadrupole ion trap undergo one-photon electron ejection (oxidation) when subjected to laser irradiation at 260 nm (4.77 eV). Electron photodetachment is likely a fast process, given that photodetachment is able to compete with internal conversion or radiative relaxation to the ground state. The DNA [6-mer]3- ions studied here show a marked sequence dependence of electron photodetachment yield. Remarkably, the photodetachment yield (dG6 > dA6 > dC6 > dT6) is inversely correlated with the base ionization potentials (G < A < C < T). Sequences with guanine runs show increased photodetachment yield as the number of guanine increases, in line with the fact that positive holes are the most stable in guanine runs. This correlation between photodetachment yield and the stability of the base radical may be explained by tunneling of the electron through the repulsive Coulomb barrier. Theoretical calculations on dinucleotide monophosphates show that the HOMO and HOMO-1 orbitals are localized on the bases. The wavelength dependence of electron detachment yield was studied for dG63-. Maximum electron photodetachment is observed in the wavelength range corresponding to base absorption (260-270 nm). This demonstrates the feasibility of gas-phase UV spectroscopy on large DNA anions. The calculations and the wavelength dependence suggest that the electron photodetachment is initiated at the bases and not at the phosphates. This also indicates that, although direct photodetachment could also occur, autodetachment from excited states, presumably corresponding to base excitation, is the dominant process at 260 nm. Excited-state dynamics of large DNA strands still remains largely unexplored, and photo-oxidation studies on trapped DNA multiply charged anions can help in bridging the gap between gas-phase studies on isolated bases or base pairs and solution-phase studies on full DNA strands.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17378565     DOI: 10.1021/ja068440z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  15 in total

1.  Electron photodetachment dissociation of DNA anions with covalently or noncovalently bound chromophores.

Authors:  Valérie Gabelica; Frédéric Rosu; Edwin De Pauw; Rodolphe Antoine; Thibault Tabarin; Michel Broyer; Philippe Dugourd
Journal:  J Am Soc Mass Spectrom       Date:  2007-08-22       Impact factor: 3.109

2.  UV-Induced Adenine Radicals Induced in DNA A-Tracts: Spectral and Dynamical Characterization.

Authors:  Akos Banyasz; Tiia-Maaria Ketola; Aurora Muñoz-Losa; Sunny Rishi; Amitava Adhikary; Michael D Sevilla; Lara Martinez-Fernandez; Roberto Improta; Dimitra Markovitsi
Journal:  J Phys Chem Lett       Date:  2016-09-22       Impact factor: 6.475

3.  VUV Photodissociation Induced by a Deuterium Lamp in an Ion Trap.

Authors:  Stefanie Ickert; Sebastian Beck; Michael W Linscheid; Jens Riedel
Journal:  J Am Soc Mass Spectrom       Date:  2019-08-19       Impact factor: 3.109

4.  Characterization of oligodeoxynucleotides and modifications by 193 nm photodissociation and electron photodetachment dissociation.

Authors:  Suncerae I Smith; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2010-09-01       Impact factor: 6.986

Review 5.  Mechanisms for DNA charge transport.

Authors:  Joseph C Genereux; Jacqueline K Barton
Journal:  Chem Rev       Date:  2010-03-10       Impact factor: 60.622

Review 6.  Photodissociation mass spectrometry: new tools for characterization of biological molecules.

Authors:  Jennifer S Brodbelt
Journal:  Chem Soc Rev       Date:  2014-01-30       Impact factor: 54.564

7.  Formation and fragmentation of radical peptide anions: insights from vacuum ultra violet spectroscopy.

Authors:  Claire Brunet; Rodolphe Antoine; Philippe Dugourd; Francis Canon; Alexandre Giuliani; Laurent Nahon
Journal:  J Am Soc Mass Spectrom       Date:  2011-11-15       Impact factor: 3.109

8.  Hybrid activation methods for elucidating nucleic acid modifications.

Authors:  Suncerae I Smith; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2010-12-09       Impact factor: 6.986

9.  Photoinduced dissociation of heparin-derived oligosaccharides controlled by charge location.

Authors:  Amandine Racaud; Rodolphe Antoine; Philippe Dugourd; Jérôme Lemoine
Journal:  J Am Soc Mass Spectrom       Date:  2010-09-07       Impact factor: 3.109

10.  Ribonucleic Acid Sequence Characterization by Negative Electron Transfer Dissociation Mass Spectrometry.

Authors:  Trenton M Peters-Clarke; Qiuwen Quan; Dain R Brademan; Alexander S Hebert; Michael S Westphall; Joshua J Coon
Journal:  Anal Chem       Date:  2020-03-05       Impact factor: 6.986

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.