Literature DB >> 17374386

Structural dynamics of protein lysine methylation and demethylation.

Xiaodong Cheng1, Xing Zhang.   

Abstract

Lysine methylation plays a central role in the "histone code" that regulates chromatin structure, impacts transcription, and responds to DNA damage. A single lysine can be mono-, di-, tri-methylated, or unmethylated, with different functional consequences for each of the four forms. This review (written in the early 2006) described structural aspects of methylation of histone lysine residues by two enzyme families with entirely different structural scaffolding (the SET proteins and Dot1p), and the protein motifs that recognize (decode) these methyl-lysine signals. We also discuss the recently discovered protein lysine demethylating enzymes (LSD1 and JmjC domains).

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Year:  2007        PMID: 17374386      PMCID: PMC2588418          DOI: 10.1016/j.mrfmmm.2006.05.041

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  108 in total

1.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

Review 2.  An epigenetic road map for histone lysine methylation.

Authors:  Monika Lachner; Roderick J O'Sullivan; Thomas Jenuwein
Journal:  J Cell Sci       Date:  2003-06-01       Impact factor: 5.285

Review 3.  Many paths to methyltransfer: a chronicle of convergence.

Authors:  Heidi L Schubert; Robert M Blumenthal; Xiaodong Cheng
Journal:  Trends Biochem Sci       Date:  2003-06       Impact factor: 13.807

4.  A knot or not a knot? SETting the record 'straight' on proteins.

Authors:  William R Taylor; Bing Xiao; Steven J Gamblin; Kuang Lin
Journal:  Comput Biol Chem       Date:  2003-02       Impact factor: 2.877

5.  Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa.

Authors:  Hisashi Tamaru; Xing Zhang; Debra McMillen; Prim B Singh; Jun-ichi Nakayama; Shiv I Grewal; C David Allis; Xiaodong Cheng; Eric U Selker
Journal:  Nat Genet       Date:  2003-05       Impact factor: 38.330

6.  Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase.

Authors:  Jinrong Min; Qin Feng; Zhizhong Li; Yi Zhang; Rui-Ming Xu
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

7.  The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains.

Authors:  Sebastian Maurer-Stroh; Nicholas J Dickens; Luke Hughes-Davies; Tony Kouzarides; Frank Eisenhaber; Chris P Ponting
Journal:  Trends Biochem Sci       Date:  2003-02       Impact factor: 13.807

8.  A novel jmjC domain protein modulates heterochromatization in fission yeast.

Authors:  Nabieh Ayoub; Ken-ichi Noma; Sara Isaac; Tamar Kahan; Shiv I S Grewal; Amikam Cohen
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

9.  Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT.

Authors:  Raymond C Trievel; E Megan Flynn; Robert L Houtz; James H Hurley
Journal:  Nat Struct Biol       Date:  2003-07

10.  A dimeric viral SET domain methyltransferase specific to Lys27 of histone H3.

Authors:  Karishma L Manzur; Amjad Farooq; Lei Zeng; Olga Plotnikova; Alexander W Koch; Ming-Ming Zhou
Journal:  Nat Struct Biol       Date:  2003-03
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  24 in total

1.  The structure of NSD1 reveals an autoregulatory mechanism underlying histone H3K36 methylation.

Authors:  Qi Qiao; Yan Li; Zhi Chen; Mingzhu Wang; Danny Reinberg; Rui-Ming Xu
Journal:  J Biol Chem       Date:  2010-12-31       Impact factor: 5.157

2.  A novel 3-methylhistidine modification of yeast ribosomal protein Rpl3 is dependent upon the YIL110W methyltransferase.

Authors:  Kristofor J Webb; Cecilia I Zurita-Lopez; Qais Al-Hadid; Arthur Laganowsky; Brian D Young; Rebecca S Lipson; Puneet Souda; Kym F Faull; Julian P Whitelegge; Steven G Clarke
Journal:  J Biol Chem       Date:  2010-09-23       Impact factor: 5.157

Review 3.  Epigenetic mechanisms facilitating oligodendrocyte development, maturation, and aging.

Authors:  Sjef Copray; Jimmy Long Huynh; Falak Sher; Patrizia Casaccia-Bonnefil; Erik Boddeke
Journal:  Glia       Date:  2009-11-15       Impact factor: 7.452

4.  Elements of the polycomb repressor SU(Z)12 needed for histone H3-K27 methylation, the interface with E(Z), and in vivo function.

Authors:  Aswathy N Rai; Marcus L Vargas; Liangjun Wang; Erica F Andersen; Ellen L Miller; Jeffrey A Simon
Journal:  Mol Cell Biol       Date:  2013-10-07       Impact factor: 4.272

5.  High-resolution mass spectrometry analysis of protein oxidations and resultant loss of function.

Authors:  Stephen Barnes; Erin M Shonsey; Shannon M Eliuk; David Stella; Kerri Barrett; Om P Srivastava; Helen Kim; Matthew B Renfrow
Journal:  Biochem Soc Trans       Date:  2008-10       Impact factor: 5.407

Review 6.  Epigenome manipulation as a pathway to new natural product scaffolds and their congeners.

Authors:  Robert H Cichewicz
Journal:  Nat Prod Rep       Date:  2009-10-27       Impact factor: 13.423

Review 7.  The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species.

Authors:  Monika Schmoll; Christoph Dattenböck; Nohemí Carreras-Villaseñor; Artemio Mendoza-Mendoza; Doris Tisch; Mario Ivan Alemán; Scott E Baker; Christopher Brown; Mayte Guadalupe Cervantes-Badillo; José Cetz-Chel; Gema Rosa Cristobal-Mondragon; Luis Delaye; Edgardo Ulises Esquivel-Naranjo; Alexa Frischmann; Jose de Jesus Gallardo-Negrete; Monica García-Esquivel; Elida Yazmin Gomez-Rodriguez; David R Greenwood; Miguel Hernández-Oñate; Joanna S Kruszewska; Robert Lawry; Hector M Mora-Montes; Tania Muñoz-Centeno; Maria Fernanda Nieto-Jacobo; Guillermo Nogueira Lopez; Vianey Olmedo-Monfil; Macario Osorio-Concepcion; Sebastian Piłsyk; Kyle R Pomraning; Aroa Rodriguez-Iglesias; Maria Teresa Rosales-Saavedra; J Alejandro Sánchez-Arreguín; Verena Seidl-Seiboth; Alison Stewart; Edith Elena Uresti-Rivera; Chih-Li Wang; Ting-Fang Wang; Susanne Zeilinger; Sergio Casas-Flores; Alfredo Herrera-Estrella
Journal:  Microbiol Mol Biol Rev       Date:  2016-02-10       Impact factor: 11.056

8.  Hypoxia induces a novel signature of chromatin modifications and global repression of transcription.

Authors:  Amber Buescher Johnson; Nicholas Denko; Michelle Craig Barton
Journal:  Mutat Res       Date:  2008-01-16       Impact factor: 2.433

9.  Dominant alleles identify SET domain residues required for histone methyltransferase of Polycomb repressive complex 2.

Authors:  Preeti Joshi; Elizabeth A Carrington; Liangjun Wang; Carrie S Ketel; Ellen L Miller; Richard S Jones; Jeffrey A Simon
Journal:  J Biol Chem       Date:  2008-08-08       Impact factor: 5.157

10.  Multiple-site trimethylation of ribosomal protein L11 by the PrmA methyltransferase.

Authors:  Hasan Demirci; Steven T Gregory; Albert E Dahlberg; Gerwald Jogl
Journal:  Structure       Date:  2008-07       Impact factor: 5.006

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