Literature DB >> 1737015

Correlation of tryptophan fluorescence intensity decay parameters with 1H NMR-determined rotamer conformations: [tryptophan2]oxytocin.

J B Ross1, H R Wyssbrod, R A Porter, G P Schwartz, C A Michaels, W R Laws.   

Abstract

While the fluorescence decay kinetics of tyrosine model compounds [Laws, W. R., Ross, J. B. A., Wyssbrod, H. R., Beechem, J. M., Brand, L., & Sutherland, J. C. (1986) Biochemistry 25, 599-607] and the tyrosine residue in oxytocin [Ross, J. B. A., Laws, W. R., Buku, A., Sutherland, J. C., & Wyssbrod, H. R. (1986) Biochemistry 25, 607-612] can be explained in terms of heterogeneity derived from the three ground-state chi 1 rotamers, a similar correlation has yet to be directly observed for a tryptophan residue. In addition, the asymmetric indole ring might also lead to heterogeneity from chi 2 rotations. In this paper, the time-resolved and steady-state fluorescence properties of [tryptophan2]oxytocin at pH 3 are presented and compared with 1H NMR results. According to the unrestricted analyses of individual fluorescence decay curves taken as a function of emission wavelength and a global analysis of these decay curves for common emission wavelength-independent decay constants, only three exponential terms are required. In addition, the preexponential weighting factors (amplitudes) have the same relative relationship (weights) as the 1H NMR-determined chi 1 rotamer populations of the indole side chain. 15N was used in heteronuclear coupling experiments to confirm the rotamer assignments. Inclusion of a linked function restricting the decay amplitudes to the chi 1 rotamer populations in the individual decay curve analyses and in the global analysis confirms this correlation. According to qualitative nuclear Overhauser data, there are two chi 2 populations. Depending upon the degree of correlation between chi 2 and chi 1, there may be from three to six side-chain conformations for the tryptophan residue. The combined fluorescence and NMR results are consistent with a rotamer model in which either (i) the chi 2 rotations are fast compared to the fluorescence intensity decay of the tryptophan residue, (ii) environmental factors affecting fluorescence intensity decay properties are dominated by chi 1 interactions, or (iii) the chi 2 and chi 1 rotations are highly correlated.

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Year:  1992        PMID: 1737015     DOI: 10.1021/bi00121a002

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  26 in total

1.  Constrained analysis of fluorescence anisotropy decay:application to experimental protein dynamics.

Authors:  Efraim Feinstein; Gintaras Deikus; Elena Rusinova; Edward L Rachofsky; J B Alexander Ross; William R Laws
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

2.  Conformational effects on tryptophan fluorescence in cyclic hexapeptides.

Authors:  Chia-Pin Pan; Mary D Barkley
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

3.  Time-resolved fluorescence study of the single tryptophans of engineered skeletal muscle troponin C.

Authors:  M She; W J Dong; P K Umeda; H C Cheung
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

Review 4.  Ultrafast fluorescence spectroscopy via upconversion applications to biophysics.

Authors:  Jianhua Xu; Jay R Knutson
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

5.  Trp42 rotamers report reduced flexibility when the inhibitor acetyl-pepstatin is bound to HIV-1 protease.

Authors:  B Ullrich; M Laberge; F Tölgyesi; Z Szeltner; L Polgár; J Fidy
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

6.  Microsecond barrier-limited chain collapse observed by time-resolved FRET and SAXS.

Authors:  Sagar V Kathuria; Can Kayatekin; Raul Barrea; Elena Kondrashkina; Rita Graceffa; Liang Guo; R Paul Nobrega; Srinivas Chakravarthy; C Robert Matthews; Thomas C Irving; Osman Bilsel
Journal:  J Mol Biol       Date:  2014-03-04       Impact factor: 5.469

7.  Tryptophan rotamer distributions in amphipathic peptides at a lipid surface.

Authors:  A H Clayton; W H Sawyer
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

8.  Interaction of Sulfadiazine with Model Water Soluble Proteins: A Combined Fluorescence Spectroscopic and Molecular Modeling Approach.

Authors:  Mullah Muhaiminul Islam; N Shaemningwar Moyon; Pynsakhiat Miki Gashnga; Sivaprasad Mitra
Journal:  J Fluoresc       Date:  2013-11-28       Impact factor: 2.217

9.  Quasi-static self-quenching of Trp-X and X-Trp dipeptides in water: ultrafast fluorescence decay.

Authors:  Jianhua Xu; Jay R Knutson
Journal:  J Phys Chem B       Date:  2009-09-03       Impact factor: 2.991

10.  Probing local secondary structure by fluorescence: time-resolved and circular dichroism studies of highly purified neurotoxins.

Authors:  T E Dahms; A G Szabo
Journal:  Biophys J       Date:  1995-08       Impact factor: 4.033

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