| Literature DB >> 17362526 |
Tobias T Schimming1, Qumar Parwez, Elisabeth Petrasch-Parwez, Michael Nothnagel, Joerg T Epplen, Sabine Hoffjan.
Abstract
BACKGROUND: Atopic dermatitis (AD) is a common inflammatory skin disorder, affecting up to 15% of children in industrialized countries. Toll-interacting protein (TOLLIP) is an inhibitory adaptor protein within the toll-like receptor (TLR) pathway, a part of the innate immune system that recognizes structurally conserved molecular patterns of microbial pathogens, leading to an inflammatory immune response.Entities:
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Year: 2007 PMID: 17362526 PMCID: PMC1832210 DOI: 10.1186/1471-5945-7-3
Source DB: PubMed Journal: BMC Dermatol ISSN: 1471-5945
Primer sequences, PCR conditions and restriction enzymes used for mutation analysis and genotyping of selected polymorphisms in the TOLLIP gene.
| Amplicon | Rs number | Amino acid | Primer | Annealing temperature | MgCl2 (mmol/l) | Restriction enzyme |
| 5743854 | - | 57°C | 2 | Hin6I | ||
| - | - | 55°C | 2 | - | ||
| 5743867 | - | 61°C | 4 | MboI | ||
| 11042484 | - | 62°C | 2 | Hin6I | ||
| - | - | 58°C | 2 | - | ||
| - | - | 66°C | 2 | - | ||
| 3750920 | Pro139Pro | 60°C | 3 | MspI | ||
| - | - | 66°C | 2 | - | ||
| 5744015 | Ala222Ser | 63°C | 2 | MwoI | ||
| 3750919 | - | 58°C | 3 | Alw26I |
F = forward primer, R = reverse primer,
*Amplicons were only amplified for SSCP analysis; no coding variation was discovered with this method
Genotype and allele frequencies of TOLLIP polymorphisms in AD patients and healthy controls*.
| Polymorphism | Genotype | Allele | AD | Controls | p-value |
| -526 C/G | C/C | 240 (76.9%) | 181(84.6%) | ||
| C/G | 65 (20.8%) | 33 (15.4%) | |||
| G/G | 7 (2.2%) | 0 (0%) | |||
| n | 312 | 214 | 0.08 | ||
| C | 545 (87.3%) | 395 (92.3%) | |||
| G | 79 ( | 33 ( | |||
| n | 624 | 428 | |||
| Intron1a | A/A | 265 (83.6 %) | 199 (88.8%) | ||
| A/G | 48 (15.1%) | 25 (11.2%) | |||
| G/G | 4 (1.3%) | 0 (0%) | |||
| n | 317 | 224 | 0.16 | ||
| A | 578 (91.2%) | 423 (94.4%) | |||
| G | 56 (8.8%) | 25 (5.6%) | |||
| n | 634 | 448 | 0.045 | ||
| Intron1b | A/A | 2 (0.6%) | 3 (1.3%) | ||
| A/G | 54 (17.3%) | 39 (17.5%) | |||
| G/G | 256 (82.1%) | 181 (81.2%) | |||
| n | 312 | 223 | 0.903 | ||
| A | 58 (9.3%) | 45 (10%) | |||
| G | 566 (90.7%) | 401 (90%) | |||
| n | 624 | 446 | 0.66 | ||
| Pro139Pro | C/C | 92 (30.4%) | 64 (30.0%) | ||
| C/T | 147 (48.5%) | 113 (53.1%) | |||
| T/T | 64 (21.1%) | 36 (16.9%) | |||
| n | 303 | 213 | 0.43 | ||
| C | 331 (54.6%) | 241 (56.6%) | |||
| T | 275 (45.4%) | 185 (43.4%) | |||
| n | 606 | 426 | 0.52 | ||
| Ala222Ser | Ala/Ala | 293 (94.5%) | 198 (89.6%) | ||
| Ala/Ser | 17 (5.5%) | 22 (9.6%) | |||
| Ser/Ser | 0 (0%) | 1 (0.5%) | |||
| n | 310 | 221 | 0.049 | ||
| Ala | 603 (97.3%) | 418 (94.6%) | |||
| Ser | 17 (2.7%) | 24 (5.4%) | |||
| n | 620 | 442 | 0.02 | ||
| 3'UTR | G/G | 193 (61.5%) | 133 (60.5%) | ||
| A/G | 105 (33.4%) | 76 (34.6%) | |||
| A/A | 16 (5.1%) | 11 (5.0%) | |||
| n | 314 | 220 | 0.965 | ||
| G | 491 (78.2%) | 342 (77.7%) | |||
| A | 137 (21.8%) | 98 (22.3%) | |||
| n | 628 | 440 | 0.86 | ||
*According to the method of multiplicity correction for SNPs in LD that was introduced by Li & Ji [20], we considered p-values < 0.0102 as significant.
TOLLIP haplotype frequencies in AD patients and controls.
| Haplotype | Frequency in AD patients (n = 312) | 95%-CI* | Frequency in controls (n = 222) | 95%-CI* |
| C-A-G-T-G-G | 0.437 | 0.396–0.477 | 0.421 | 0.376–0.466 |
| C-A-G-C-G-A | 0.202 | 0.169–0.236 | 0.205 | 0.169–0.245 |
| C-A-G-C-G-G | 0.106 | 0.081–0.133 | 0.138 | 0.104–0.175 |
| C-A-A-C-G-G | 0.091 | 0.069–0.114 | 0.090 | 0.063–0.119 |
| G-G-G-C-G-G | 0.083 | 0.061–0.107 | 0.055 | 0.034–0.076 |
| G-A-G-C-G-G | 0.031 | 0.016–0.046 | 0.023 | 0.009–0.039 |
| C-A-G-C-T-G | 0.026 | 0.014–0.039 | 0.041 | 0.022–0.061 |
*95% confidence interval for the haplotype frequency estimate using 10,000 bootstrap samples with replacement (non-parametric bootstrap).
Figure 1. Total RNA samples were extracted from EBV-transformed lymphoblastoid cell lines and mRNA levels measured by quantitative real-time PCR. For each individual, mRNA expression is shown relative to the mean expression of the six individuals with the opposite genotype. The range of expression changes is less than 2-fold for each individual except ID11. No significant differences in TOLLIP mRNA expression between genotypes were obvious.