Literature DB >> 17360597

The metabolic signature related to high plant growth rate in Arabidopsis thaliana.

Rhonda C Meyer1, Matthias Steinfath, Jan Lisec, Martina Becher, Hanna Witucka-Wall, Ottó Törjék, Oliver Fiehn, Anne Eckardt, Lothar Willmitzer, Joachim Selbig, Thomas Altmann.   

Abstract

The decline of available fossil fuel reserves has triggered world-wide efforts to develop alternative energy sources based on plant biomass. Detailed knowledge of the relations of metabolism and biomass accumulation can be expected to yield powerful novel tools to accelerate and enhance energy plant breeding programs. We used metabolic profiling in the model Arabidopsis to study the relation between biomass and metabolic composition using a recombinant inbred line (RIL) population. A highly significant canonical correlation (0.73) was observed, revealing a close link between biomass and a specific combination of metabolites. Dividing the entire data set into training and test sets resulted in a median correlation between predicted and true biomass of 0.58. The demonstrated high predictive power of metabolic composition for biomass features this composite measure as an excellent biomarker and opens new opportunities to enhance plant breeding specifically in the context of renewable resources.

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Year:  2007        PMID: 17360597      PMCID: PMC1810331          DOI: 10.1073/pnas.0609709104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  Metabonomics technologies and their applications in physiological monitoring, drug safety assessment and disease diagnosis.

Authors:  John C Lindon; Elaine Holmes; Mary E Bollard; Elizabeth G Stanley; Jeremy K Nicholson
Journal:  Biomarkers       Date:  2004 Jan-Feb       Impact factor: 2.658

Review 2.  Metabolite profiling: from diagnostics to systems biology.

Authors:  Alisdair R Fernie; Richard N Trethewey; Arno J Krotzky; Lothar Willmitzer
Journal:  Nat Rev Mol Cell Biol       Date:  2004-09       Impact factor: 94.444

3.  Heterosis of biomass production in Arabidopsis. Establishment during early development.

Authors:  Rhonda C Meyer; Ottó Törjék; Martina Becher; Thomas Altmann
Journal:  Plant Physiol       Date:  2004-04-02       Impact factor: 8.340

4.  GC-MS libraries for the rapid identification of metabolites in complex biological samples.

Authors:  Nicolas Schauer; Dirk Steinhauser; Sergej Strelkov; Dietmar Schomburg; Gordon Allison; Thomas Moritz; Krister Lundgren; Ute Roessner-Tunali; Megan G Forbes; Lothar Willmitzer; Alisdair R Fernie; Joachim Kopka
Journal:  FEBS Lett       Date:  2005-01-28       Impact factor: 4.124

5.  The use of recombinant inbred lines (RILs) for genetic mapping.

Authors:  C Alonso-Blanco; M Koornneef; P Stam
Journal:  Methods Mol Biol       Date:  1998

Review 6.  Control of plant development and gene expression by sugar signaling.

Authors:  Susan I Gibson
Journal:  Curr Opin Plant Biol       Date:  2005-02       Impact factor: 7.834

7.  Relationship between ascorbic acid and cell division.

Authors:  R Liso; G Calabrese; M B Bitonti; O Arrigoni
Journal:  Exp Cell Res       Date:  1984-02       Impact factor: 3.905

8.  A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness.

Authors:  Yves Gibon; Oliver E Blaesing; Jan Hannemann; Petronia Carillo; Melanie Höhne; Janneke H M Hendriks; Natalia Palacios; Joanna Cross; Joachim Selbig; Mark Stitt
Journal:  Plant Cell       Date:  2004-11-17       Impact factor: 11.277

9.  High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

Authors:  Jess Allen; Hazel M Davey; David Broadhurst; Jim K Heald; Jem J Rowland; Stephen G Oliver; Douglas B Kell
Journal:  Nat Biotechnol       Date:  2003-05-12       Impact factor: 54.908

10.  Trehalose 6-phosphate is indispensable for carbohydrate utilization and growth in Arabidopsis thaliana.

Authors:  Henriette Schluepmann; Till Pellny; Anja van Dijken; Sjef Smeekens; Matthew Paul
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-14       Impact factor: 11.205

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  142 in total

Review 1.  Metabolomics of forage plants: a review.

Authors:  Susanne Rasmussen; Anthony J Parsons; Christopher S Jones
Journal:  Ann Bot       Date:  2012-02-19       Impact factor: 4.357

2.  Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions.

Authors:  Ronan Sulpice; Sandra Trenkamp; Matthias Steinfath; Bjorn Usadel; Yves Gibon; Hanna Witucka-Wall; Eva-Theresa Pyl; Hendrik Tschoep; Marie Caroline Steinhauser; Manuela Guenther; Melanie Hoehne; Johann M Rohwer; Thomas Altmann; Alisdair R Fernie; Mark Stitt
Journal:  Plant Cell       Date:  2010-08-10       Impact factor: 11.277

3.  Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function.

Authors:  Takayuki Tohge; Alisdair R Fernie
Journal:  Nat Protoc       Date:  2010-06-10       Impact factor: 13.491

4.  Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation.

Authors:  Takayuki Tohge; Federico Scossa; Alisdair R Fernie
Journal:  Plant Physiol       Date:  2015-09-14       Impact factor: 8.340

5.  Natural Variation of Plant Metabolism: Genetic Mechanisms, Interpretive Caveats, and Evolutionary and Mechanistic Insights.

Authors:  Nicole E Soltis; Daniel J Kliebenstein
Journal:  Plant Physiol       Date:  2015-08-13       Impact factor: 8.340

6.  Association analysis of phenotypic and metabolomic changes in Arabidopsis accessions and their F1 hybrids affected by different photoperiod and sucrose supply.

Authors:  Quynh Thi Ngoc Le; Naoya Sugi; Jun Furukawa; Makoto Kobayashi; Kazuki Saito; Miyako Kusano; Hiroshi Shiba
Journal:  Plant Biotechnol (Tokyo)       Date:  2019-09-25       Impact factor: 1.133

7.  Integrated transcript and metabolite profiling reveals coordination between biomass size and nitrogen metabolism in Arabidopsis F1 hybrids.

Authors:  Naoya Sugi; Quynh Thi Ngoc Le; Makoto Kobayashi; Miyako Kusano; Hiroshi Shiba
Journal:  Plant Biotechnol (Tokyo)       Date:  2021-03-25       Impact factor: 1.133

8.  Action of gibberellins on growth and metabolism of Arabidopsis plants associated with high concentration of carbon dioxide.

Authors:  Dimas M Ribeiro; Wagner L Araújo; Alisdair R Fernie; Jos H M Schippers; Bernd Mueller-Roeber
Journal:  Plant Physiol       Date:  2012-10-22       Impact factor: 8.340

9.  A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis.

Authors:  Zheng Li; Nooshin Omranian; Lutz Neumetzler; Ting Wang; Thomas Herter; Bjoern Usadel; Taku Demura; Patrick Giavalisco; Zoran Nikoloski; Staffan Persson
Journal:  Plant Physiol       Date:  2016-08-26       Impact factor: 8.340

10.  A quantitative genetic study for elucidating the contribution of glutamine synthetase, glutamate dehydrogenase and other nitrogen-related physiological traits to the agronomic performance of common wheat.

Authors:  Jean-Xavier Fontaine; Catherine Ravel; Karine Pageau; Emmanuel Heumez; Frédéric Dubois; Bertrand Hirel; Jacques Le Gouis
Journal:  Theor Appl Genet       Date:  2009-06-10       Impact factor: 5.699

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