Literature DB >> 17359136

Bell's expression and the generalized Garg form for forced dissociation of a biomolecular complex.

Han-Jou Lin1, Hsuan-Yi Chen, Yu-Jane Sheng, Heng-Kwong Tsao.   

Abstract

The dissociation of a biomolecular complex under the action of constant force, constant loading rate, and periodic force is studied theoretically. We show that the celebrated Bell expression provides a good approximation for the bond dissociation rate when F/F(c)<<1, where F(c) is the maxima slope of the binding potential along the reaction coordinate. When 1-F/F(c) <<1 the dissociation rate is better described by a generalized Garg form in which the potential derivative is expanded near F(c). We also show that a constant-force experiment is suitable for extracting the activation energy of the bond, a constant loading experiment is suitable to extract F(c), while time-periodic force can be applied to extract both bond dissociation rates at zero force and F(c).

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Year:  2007        PMID: 17359136     DOI: 10.1103/PhysRevLett.98.088304

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  8 in total

1.  Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments.

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2.  On artifacts in single-molecule force spectroscopy.

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3.  Multiple barriers in forced rupture of protein complexes.

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4.  Stochastic simulation of single-molecule pulling experiments.

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5.  Noise-activated dissociation of soft elastic contacts.

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Journal:  Eur Phys J E Soft Matter       Date:  2012-12-17       Impact factor: 1.890

6.  Interpreting the widespread nonlinear force spectra of intermolecular bonds.

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7.  Kinetic Ductility and Force-Spike Resistance of Proteins from Single-Molecule Force Spectroscopy.

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Review 8.  Biological physics by high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Lorena Redondo-Morata; Felix Rico
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-10-26       Impact factor: 4.226

  8 in total

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