Literature DB >> 27558726

Kinetic Ductility and Force-Spike Resistance of Proteins from Single-Molecule Force Spectroscopy.

Pilar Cossio1, Gerhard Hummer2, Attila Szabo3.   

Abstract

Ductile materials can absorb spikes in mechanical force, whereas brittle ones fail catastrophically. Here we develop a theory to quantify the kinetic ductility of single molecules from force spectroscopy experiments, relating force-spike resistance to the differential responses of the intact protein and the unfolding transition state to an applied mechanical force. We introduce a class of unistable one-dimensional potential surfaces that encompass previous models as special cases and continuously cover the entire range from ductile to brittle. Compact analytic expressions for force-dependent rates and rupture-force distributions allow us to analyze force-clamp and force-ramp pulling experiments. We find that the force-transmitting protein domains of filamin and titin are kinetically ductile when pulled from their two termini, making them resistant to force spikes. For the mechanostable muscle protein titin, a highly ductile model reconciles data over 10 orders of magnitude in force loading rate from experiment and simulation.
Copyright © 2016 Biophysical Society. All rights reserved.

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Year:  2016        PMID: 27558726      PMCID: PMC5002075          DOI: 10.1016/j.bpj.2016.05.054

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Kinetics from nonequilibrium single-molecule pulling experiments.

Authors:  Gerhard Hummer; Attila Szabo
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

2.  On artifacts in single-molecule force spectroscopy.

Authors:  Pilar Cossio; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-04       Impact factor: 11.205

3.  Single-molecule unfolding force distributions reveal a funnel-shaped energy landscape.

Authors:  Michael Schlierf; Matthias Rief
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

4.  Intrinsic rates and activation free energies from single-molecule pulling experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Phys Rev Lett       Date:  2006-03-15       Impact factor: 9.161

5.  Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins.

Authors:  Olga K Dudko; Jérôme Mathé; Attila Szabo; Amit Meller; Gerhard Hummer
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

6.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

7.  Single-molecule fluorescence experiments determine protein folding transition path times.

Authors:  Hoi Sung Chung; Kevin McHale; John M Louis; William A Eaton
Journal:  Science       Date:  2012-02-24       Impact factor: 47.728

Review 8.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

9.  Single-molecule chemo-mechanical unfolding reveals multiple transition state barriers in a small single-domain protein.

Authors:  Emily J Guinn; Bharat Jagannathan; Susan Marqusee
Journal:  Nat Commun       Date:  2015-04-17       Impact factor: 14.919

10.  Single-molecule force spectroscopy reveals force-enhanced binding of calcium ions by gelsolin.

Authors:  Chunmei Lv; Xiang Gao; Wenfei Li; Bo Xue; Meng Qin; Leslie D Burtnick; Hao Zhou; Yi Cao; Robert C Robinson; Wei Wang
Journal:  Nat Commun       Date:  2014-08-07       Impact factor: 14.919

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  6 in total

1.  Forced-rupture of cell-adhesion complexes reveals abrupt switch between two brittle states.

Authors:  Ngo Minh Toan; D Thirumalai
Journal:  J Chem Phys       Date:  2018-03-28       Impact factor: 3.488

2.  Heterogeneous and rate-dependent streptavidin-biotin unbinding revealed by high-speed force spectroscopy and atomistic simulations.

Authors:  Felix Rico; Andreas Russek; Laura González; Helmut Grubmüller; Simon Scheuring
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-19       Impact factor: 11.205

3.  The SecA motor generates mechanical force during protein translocation.

Authors:  Riti Gupta; Dmitri Toptygin; Christian M Kaiser
Journal:  Nat Commun       Date:  2020-07-30       Impact factor: 14.919

4.  Structural-elastic determination of the force-dependent transition rate of biomolecules.

Authors:  Shiwen Guo; Qingnan Tang; Mingxi Yao; Huijuan You; Shimin Le; Hu Chen; Jie Yan
Journal:  Chem Sci       Date:  2018-05-29       Impact factor: 9.825

Review 5.  High-speed force spectroscopy: microsecond force measurements using ultrashort cantilevers.

Authors:  Claire Valotteau; Fidan Sumbul; Felix Rico
Journal:  Biophys Rev       Date:  2019-10-07

Review 6.  Biological physics by high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Lorena Redondo-Morata; Felix Rico
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-10-26       Impact factor: 4.226

  6 in total

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