Literature DB >> 17358986

Mechanochemical kinetics of transcription elongation.

Lu Bai1, Robert M Fulbright, Michelle D Wang.   

Abstract

The mechanochemical kinetics of transcription elongation was examined with a combination of theoretical and experimental approaches. The predictive power of a sequence-dependent thermal ratchet model for transcription elongation was tested by establishing model parameters based solely on measurements under chemical perturbations and then directly predicting responses under mechanical perturbations without additional model parameters. Agreement between predicted and measured force-velocity curves provides strong support for a simple mechanochemical coupling mechanism.

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Year:  2007        PMID: 17358986     DOI: 10.1103/PhysRevLett.98.068103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  32 in total

1.  The Influence of Look-Ahead on the Error Rate of Transcription.

Authors:  Y R Yamada; C S Peskin
Journal:  Math Model Nat Phenom       Date:  2010-01-27       Impact factor: 4.157

2.  Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.

Authors:  Matthew H Larson; Jing Zhou; Craig D Kaplan; Murali Palangat; Roger D Kornberg; Robert Landick; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

3.  Efficient reconstitution of transcription elongation complexes for single-molecule studies of eukaryotic RNA polymerase II.

Authors:  Murali Palangat; Matthew H Larson; Xiaopeng Hu; Averell Gnatt; Steven M Block; Robert Landick
Journal:  Transcription       Date:  2012 May-Jun

4.  A look-ahead model for the elongation dynamics of transcription.

Authors:  Yujiro Richard Yamada; Charles S Peskin
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

Review 5.  Single-molecule studies of RNA polymerase: motoring along.

Authors:  Kristina M Herbert; William J Greenleaf; Steven M Block
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

6.  A unified model of transcription elongation: what have we learned from single-molecule experiments?

Authors:  Vasisht R Tadigotla; Evgeny Nudler; Andrei E Ruckenstein
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

7.  Development of a "modular" scheme to describe the kinetics of transcript elongation by RNA polymerase.

Authors:  Sandra J Greive; Jim P Goodarzi; Steven E Weitzel; Peter H von Hippel
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

Review 8.  The Mechanisms of Substrate Selection, Catalysis, and Translocation by the Elongating RNA Polymerase.

Authors:  Georgiy A Belogurov; Irina Artsimovitch
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

9.  RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase.

Authors:  Pyae P Hein; Murali Palangat; Robert Landick
Journal:  Biochemistry       Date:  2011-07-21       Impact factor: 3.162

10.  Jamming the ratchet of transcription.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Nat Struct Mol Biol       Date:  2008-08       Impact factor: 15.369

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