Literature DB >> 17356883

Plant sigma factors and their role in plastid transcription.

Eugene A Lysenko1.   

Abstract

Plant sigma factors determine the promoter specificity of the major RNA polymerase of plastids and thus regulate the first level of plastome gene expression. In plants, sigma factors are encoded by a small family of nuclear genes, and it is not yet clear if the family members are functionally redundant or each paralog plays a particular role. The review presents the analysis of the information on plant sigma factors obtained since their discovery a decade ago and focuses on similarities and differences in structure and functions of various paralogs. Special attention is paid to their interaction with promoters, the regulation of their expression, and their role in the development of a whole plant. The analysis suggests that though plant sigma factors are basically similar, at least some of them perform distinct functions. Finally, the work presents the scheme of this gene family evolution in higher plants.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17356883     DOI: 10.1007/s00299-007-0318-7

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  99 in total

Review 1.  The role of sigma factors in plastid transcription.

Authors:  L A Allison
Journal:  Biochimie       Date:  2000 Jun-Jul       Impact factor: 4.079

2.  Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution.

Authors:  Dmitry G Vassylyev; Shun-ichi Sekine; Oleg Laptenko; Jookyung Lee; Marina N Vassylyeva; Sergei Borukhov; Shigeyuki Yokoyama
Journal:  Nature       Date:  2002-05-08       Impact factor: 49.962

3.  Affinity purification of the tobacco plastid RNA polymerase and in vitro reconstitution of the holoenzyme.

Authors:  Jon Y Suzuki; A Jimmy Ytterberg; Thomas A Beardslee; Lori A Allison; Klaas Jan Wijk; Pal Maliga
Journal:  Plant J       Date:  2004-10       Impact factor: 6.417

4.  Differential expression on a daily basis of plastid sigma factor genes from the moss Physcomitrella patens. Regulatory interactions among PpSig5, the circadian clock, and blue light signaling mediated by cryptochromes.

Authors:  Kazuhiro Ichikawa; Mamoru Sugita; Takato Imaizumi; Masamitsu Wada; Setsuyuki Aoki
Journal:  Plant Physiol       Date:  2004-11-24       Impact factor: 8.340

5.  Effects of H-NS and potassium glutamate on sigmaS- and sigma70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli.

Authors:  K Rajkumari; S Kusano; A Ishihama; T Mizuno; J Gowrishankar
Journal:  J Bacteriol       Date:  1996-07       Impact factor: 3.490

6.  The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids.

Authors:  P T Hajdukiewicz; L A Allison; P Maliga
Journal:  EMBO J       Date:  1997-07-01       Impact factor: 11.598

7.  Blue light specific and differential expression of a plastid sigma factor, Sig5 in Arabidopsis thaliana.

Authors:  Yuichi Tsunoyama; Kazuya Morikawa; Takashi Shiina; Yoshinori Toyoshima
Journal:  FEBS Lett       Date:  2002-04-10       Impact factor: 4.124

8.  A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.

Authors:  Thomas A Beardslee; Sanchita Roy-Chowdhury; Pankaj Jaiswal; Laurence Buhot; Silva Lerbs-Mache; David B Stern; Lori A Allison
Journal:  Plant J       Date:  2002-07       Impact factor: 6.417

9.  The multiple-stress responsive plastid sigma factor, SIG5, directs activation of the psbD blue light-responsive promoter (BLRP) in Arabidopsis thaliana.

Authors:  Akitomo Nagashima; Mitsumasa Hanaoka; Toshiharu Shikanai; Makoto Fujiwara; Kengo Kanamaru; Hideo Takahashi; Kan Tanaka
Journal:  Plant Cell Physiol       Date:  2004-04       Impact factor: 4.927

10.  Specific function of a plastid sigma factor for ndhF gene transcription.

Authors:  Jean-Jacques Favory; Masanori Kobayshi; Kan Tanaka; Gilles Peltier; Martin Kreis; Jean-Gabriel Valay; Silva Lerbs-Mache
Journal:  Nucleic Acids Res       Date:  2005-10-20       Impact factor: 16.971

View more
  37 in total

1.  Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?

Authors:  Silva Lerbs-Mache
Journal:  Plant Mol Biol       Date:  2010-11-25       Impact factor: 4.076

2.  Plastid Genomes of Flowering Plants: Essential Principles.

Authors:  Tracey A Ruhlman; Robert K Jansen
Journal:  Methods Mol Biol       Date:  2021

3.  Phage-type RNA polymerase RPOTmp transcribes the rrn operon from the PC promoter at early developmental stages in Arabidopsis.

Authors:  Florence Courtois; Livia Merendino; Emilie Demarsy; Régis Mache; Silva Lerbs-Mache
Journal:  Plant Physiol       Date:  2007-09-20       Impact factor: 8.340

Review 4.  Photosynthetic gene expression in higher plants.

Authors:  James O Berry; Pradeep Yerramsetty; Amy M Zielinski; Christopher M Mure
Journal:  Photosynth Res       Date:  2013-07-10       Impact factor: 3.573

5.  Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts.

Authors:  Sujith Puthiyaveetil; Iskander M Ibrahim; John F Allen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-06-10       Impact factor: 6.237

6.  Plastid Gene Transcription: An Update on Promoters and RNA Polymerases.

Authors:  Jennifer Ortelt; Gerhard Link
Journal:  Methods Mol Biol       Date:  2021

7.  A developmental transcriptional network for maize defines coexpression modules.

Authors:  Gregory S Downs; Yong-Mei Bi; Joseph Colasanti; Wenqing Wu; Xi Chen; Tong Zhu; Steven J Rothstein; Lewis N Lukens
Journal:  Plant Physiol       Date:  2013-02-06       Impact factor: 8.340

8.  Lack of conservation of bacterial type promoters in plastids of Streptophyta.

Authors:  Vassily A Lyubetsky; Lev I Rubanov; Alexandr V Seliverstov
Journal:  Biol Direct       Date:  2010-05-10       Impact factor: 4.540

9.  Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.

Authors:  Hidemitsu Nakamura; Masayuki Muramatsu; Makoto Hakata; Osamu Ueno; Yoshiaki Nagamura; Hirohiko Hirochika; Makoto Takano; Hiroaki Ichikawa
Journal:  Plant Cell Physiol       Date:  2009-10-06       Impact factor: 4.927

10.  AtSIG6, a plastid sigma factor from Arabidopsis, reveals functional impact of cpCK2 phosphorylation.

Authors:  Jennifer Schweer; Hacer Türkeri; Brigitte Link; Gerhard Link
Journal:  Plant J       Date:  2010-01-18       Impact factor: 6.417

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.