Literature DB >> 17354969

Automated analysis of the mitotic phases of human cells in 3D fluorescence microscopy image sequences.

Nathalie Harder1, Felipe Mora-Bermúdez, William J Godinez, Jan Ellenberg, Roland Eils, Karl Rohr.   

Abstract

The evaluation of fluorescence microscopy images acquired in high-throughput cell phenotype screens constitutes a substantial bottleneck and motivates the development of automated image analysis methods. Here we introduce a computational scheme to process 3D multi-cell time-lapse images as they are produced in large-scale RNAi experiments. We describe an approach to automatically segment, track, and classify cell nuclei into different mitotic phases. This enables automated analysis of the duration of single phases of the cell life cycle and thus the identification of cell cultures that show an abnormal mitotic behavior. Our scheme proves a high accuracy, suggesting a promising future for automating the evaluation of high-throughput experiments.

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Year:  2006        PMID: 17354969     DOI: 10.1007/11866565_103

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  9 in total

1.  High-throughput screening of large volumes of whole blood using structured illumination and fluorescent on-chip imaging.

Authors:  Serap Altay Arpali; Caglar Arpali; Ahmet F Coskun; Hsin-Hao Chiang; Aydogan Ozcan
Journal:  Lab Chip       Date:  2012-12-07       Impact factor: 6.799

2.  A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.

Authors:  Michael B Mayhew; Joshua W Robinson; Boyoun Jung; Steven B Haase; Alexander J Hartemink
Journal:  Bioinformatics       Date:  2011-07-01       Impact factor: 6.937

3.  Cell cycle phase classification in 3D in vivo microscopy of Drosophila embryogenesis.

Authors:  Tie Hua Du; Wee Choo Puah; Martin Wasser
Journal:  BMC Bioinformatics       Date:  2011-11-30       Impact factor: 3.169

4.  A Novel Multiobject Tracking Approach in the Presence of Collision and Division.

Authors:  Mingli Lu; Benlian Xu; Andong Sheng; Zhengqiang Jiang; Liping Wang; Peiyi Zhu; Jian Shi
Journal:  Comput Math Methods Med       Date:  2015-05-17       Impact factor: 2.238

5.  Bright field microscopic cells counting method for BEVS using nonlinear convergence index sliding band filter.

Authors:  Dong Sui; Kuanquan Wang; Heemin Park; Jinseok Chae
Journal:  Biomed Eng Online       Date:  2014-10-24       Impact factor: 2.819

6.  Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening.

Authors:  Vebjorn Ljosa; Anne E Carpenter
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

Review 7.  Chapter 17: bioimage informatics for systems pharmacology.

Authors:  Fuhai Li; Zheng Yin; Guangxu Jin; Hong Zhao; Stephen T C Wong
Journal:  PLoS Comput Biol       Date:  2013-04-25       Impact factor: 4.475

8.  Time-lapse imaging of neuroblastoma cells to determine cell fate upon gene knockdown.

Authors:  Richa Batra; Nathalie Harder; Sina Gogolin; Nicolle Diessl; Zita Soons; Christina Jäger-Schmidt; Christian Lawerenz; Roland Eils; Karl Rohr; Frank Westermann; Rainer König
Journal:  PLoS One       Date:  2012-12-12       Impact factor: 3.240

9.  Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli.

Authors:  Gunnar Schramm; Marc Zapatka; Roland Eils; Rainer König
Journal:  BMC Bioinformatics       Date:  2007-05-08       Impact factor: 3.169

  9 in total

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