Literature DB >> 17352923

Recombineering: in vivo genetic engineering in E. coli, S. enterica, and beyond.

James A Sawitzke1, Lynn C Thomason, Nina Costantino, Mikhail Bubunenko, Simanti Datta, Donald L Court.   

Abstract

"Recombineering," in vivo genetic engineering with short DNA homologies, is changing how constructs are made. The methods are simple, precise, efficient, rapid, and inexpensive. Complicated genetic constructs that can be difficult or even impossible to make with in vitro genetic engineering can be created in days with recombineering. DNA molecules that are too large to manipulate with classical techniques are amenable to recombineering. This technology utilizes the phage lambda homologous recombination functions, proteins that can efficiently catalyze recombination between short homologies. Recombineering can be accomplished with linear PCR products or even single-stranded oligos. In this chapter we discuss methods of and ways to use recombineering.

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Year:  2007        PMID: 17352923     DOI: 10.1016/S0076-6879(06)21015-2

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  98 in total

1.  Lambda red recombineering in Escherichia coli occurs through a fully single-stranded intermediate.

Authors:  J A Mosberg; M J Lajoie; G M Church
Journal:  Genetics       Date:  2010-09-02       Impact factor: 4.562

2.  Lambda red-mediated genetic modification of the insect endosymbiont Sodalis glossinidius.

Authors:  Mauricio H Pontes; Colin Dale
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

3.  Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.

Authors:  Patricia L Foster; Heewook Lee; Ellen Popodi; Jesse P Townes; Haixu Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

4.  Site-directed disulfide cross-linking shows that cleft flexibility in the periplasmic domain is needed for the multidrug efflux pump AcrB of Escherichia coli.

Authors:  Yumiko Takatsuka; Hiroshi Nikaido
Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

5.  Single-Homology-Arm Linear DNA Recombination by the Nonhomologous End Joining Pathway as a Novel and Simple Gene Inactivation Method: a Proof-of-Concept Study in Dietzia sp. Strain DQ12-45-1b.

Authors:  Shelian Lu; Yong Nie; Meng Wang; Hong-Xiu Xu; Dong-Ling Ma; Jie-Liang Liang; Xiao-Lei Wu
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

6.  Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli.

Authors:  Yan Ning Zhou; Lucyna Lubkowska; Monica Hui; Carolyn Court; Shuo Chen; Donald L Court; Jeffrey Strathern; Ding Jun Jin; Mikhail Kashlev
Journal:  J Biol Chem       Date:  2012-12-05       Impact factor: 5.157

7.  Temperature sensitivity and cell division defects in an Escherichia coli strain with mutations in yghB and yqjA, encoding related and conserved inner membrane proteins.

Authors:  Kandi Thompkins; Ballari Chattopadhyay; Ying Xiao; Margaret C Henk; William T Doerrler
Journal:  J Bacteriol       Date:  2008-05-02       Impact factor: 3.490

8.  The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae.

Authors:  Jeffrey Strathern; Francisco Malagon; Jordan Irvin; Deanna Gotte; Brenda Shafer; Maria Kireeva; Lucyna Lubkowska; Ding Jun Jin; Mikhail Kashlev
Journal:  J Biol Chem       Date:  2012-12-05       Impact factor: 5.157

9.  Recombineering: a homologous recombination-based method of genetic engineering.

Authors:  Shyam K Sharan; Lynn C Thomason; Sergey G Kuznetsov; Donald L Court
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

10.  Mobile antibiotic resistance encoding elements promote their own diversity.

Authors:  Geneviève Garriss; Matthew K Waldor; Vincent Burrus
Journal:  PLoS Genet       Date:  2009-12-18       Impact factor: 5.917

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