Literature DB >> 17350574

Nutritional control of elongation of DNA replication by (p)ppGpp.

Jue D Wang1, Glenn M Sanders, Alan D Grossman.   

Abstract

DNA replication is highly regulated in most organisms. Although much research has focused on mechanisms that regulate initiation of replication, mechanisms that regulate elongation of replication are less well understood. We characterized a mechanism that regulates replication elongation in the bacterium Bacillus subtilis. Replication elongation was inhibited within minutes after amino acid starvation, regardless of where the replication forks were located on the chromosome. We found that small nucleotides ppGpp and pppGpp, which are induced upon starvation, appeared to inhibit replication directly by inhibiting primase, an essential component of the replication machinery. The replication forks arrested with (p)ppGpp did not recruit the recombination protein RecA, indicating that the forks are not disrupted. (p)ppGpp appear to be part of a surveillance mechanism that links nutrient availability to replication by rapidly inhibiting replication in starved cells, thereby preventing replication-fork disruption. This control may be important for cells to maintain genomic integrity.

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Year:  2007        PMID: 17350574      PMCID: PMC1850998          DOI: 10.1016/j.cell.2006.12.043

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  45 in total

1.  The replication checkpoint control in Bacillus subtilis: identification of a novel RTP-binding sequence essential for the replication fork arrest after induction of the stringent response.

Authors:  S Autret; A Levine; F Vannier; Y Fujita; S J Séror
Journal:  Mol Microbiol       Date:  1999-03       Impact factor: 3.501

2.  A bacterial G protein-mediated response to replication arrest.

Authors:  James J Foti; Jaclyn Schienda; Vincent A Sutera; Susan T Lovett
Journal:  Mol Cell       Date:  2005-02-18       Impact factor: 17.970

3.  Developmental regulation of DNA replication: replication fork barriers and programmed gene amplification in Tetrahymena thermophila.

Authors:  Z Zhang; D M Macalpine; G M Kapler
Journal:  Mol Cell Biol       Date:  1997-10       Impact factor: 4.272

4.  Developmental regulation of replication fork pausing in Xenopus laevis ribosomal RNA genes.

Authors:  C Maric; B Levacher; O Hyrien
Journal:  J Mol Biol       Date:  1999-08-27       Impact factor: 5.469

Review 5.  Polymerases and the replisome: machines within machines.

Authors:  T A Baker; S P Bell
Journal:  Cell       Date:  1998-02-06       Impact factor: 41.582

6.  Cloning and characterization of a relA/spoT homologue from Bacillus subtilis.

Authors:  T M Wendrich; M A Marahiel
Journal:  Mol Microbiol       Date:  1997-10       Impact factor: 3.501

7.  Purification of DNA polymerase III of gram-positive bacteria.

Authors:  M H Barnes; N C Brown
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

8.  Independence of replisomes in Escherichia coli chromosomal replication.

Authors:  Adam M Breier; Heinz-Ulrich G Weier; Nicholas R Cozzarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

9.  An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation.

Authors:  Libor Krásný; Richard L Gourse
Journal:  EMBO J       Date:  2004-10-21       Impact factor: 11.598

10.  Primosome assembly site in Bacillus subtilis.

Authors:  C Bruand; S D Ehrlich; L Jannière
Journal:  EMBO J       Date:  1995-06-01       Impact factor: 11.598

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  131 in total

1.  Linkage between the bacterial acid stress and stringent responses: the structure of the inducible lysine decarboxylase.

Authors:  Usheer Kanjee; Irina Gutsche; Eftichia Alexopoulos; Boyu Zhao; Majida El Bakkouri; Guillaume Thibault; Kaiyin Liu; Shaliny Ramachandran; Jamie Snider; Emil F Pai; Walid A Houry
Journal:  EMBO J       Date:  2011-01-28       Impact factor: 11.598

2.  Polyphosphate granule biogenesis is temporally and functionally tied to cell cycle exit during starvation in Pseudomonas aeruginosa.

Authors:  Lisa R Racki; Elitza I Tocheva; Michael G Dieterle; Meaghan C Sullivan; Grant J Jensen; Dianne K Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-06       Impact factor: 11.205

Review 3.  ppGpp: magic beyond RNA polymerase.

Authors:  Zachary D Dalebroux; Michele S Swanson
Journal:  Nat Rev Microbiol       Date:  2012-02-16       Impact factor: 60.633

Review 4.  ppGpp conjures bacterial virulence.

Authors:  Zachary D Dalebroux; Sarah L Svensson; Erin C Gaynor; Michele S Swanson
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

5.  Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis.

Authors:  Wiep Klaas Smits; Houra Merrikh; Carla Yaneth Bonilla; Alan D Grossman
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

6.  Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork.

Authors:  Andrew D Klocko; Jeremy W Schroeder; Brian W Walsh; Justin S Lenhart; Margery L Evans; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2011-09-30       Impact factor: 3.501

7.  Single-molecule motions and interactions in live cells reveal target search dynamics in mismatch repair.

Authors:  Yi Liao; Jeremy W Schroeder; Burke Gao; Lyle A Simmons; Julie S Biteen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

8.  ppGpp-dependent negative control of DNA replication of Shiga toxin-converting bacteriophages in Escherichia coli.

Authors:  Dariusz Nowicki; Wioletta Kobiela; Alicja Węgrzyn; Grzegorz Wegrzyn; Agnieszka Szalewska-Pałasz
Journal:  J Bacteriol       Date:  2013-08-30       Impact factor: 3.490

9.  Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis.

Authors:  Jue D Wang; Melanie B Berkmen; Alan D Grossman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

10.  Functional analysis of the essential GTP-binding-protein-coding gene cgtA of Vibrio cholerae.

Authors:  Sangita Shah; Bhabatosh Das; Rupak K Bhadra
Journal:  J Bacteriol       Date:  2008-05-02       Impact factor: 3.490

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