Literature DB >> 17349953

Rad50 adenylate kinase activity regulates DNA tethering by Mre11/Rad50 complexes.

Venugopal Bhaskara1, Aude Dupré, Bettina Lengsfeld, Ben B Hopkins, Angela Chan, Ji-Hoon Lee, Xiaoming Zhang, Jean Gautier, Virginia Zakian, Tanya T Paull.   

Abstract

Mre11 and Rad50 are the catalytic components of a highly conserved DNA repair complex that functions in many aspects of DNA metabolism involving double-strand breaks. The ATPase domains in Rad50 are related to the ABC transporter family of ATPases, previously shown to share structural similarities with adenylate kinases. Here we demonstrate that Mre11/Rad50 complexes from three organisms catalyze the reversible adenylate kinase reaction in vitro. Mutation of the conserved signature motif reduces the adenylate kinase activity of Rad50 but does not reduce ATP hydrolysis. This mutant resembles a rad50 null strain with respect to meiosis and telomere maintenance in S. cerevisiae, correlating adenylate kinase activity with in vivo functions. An adenylate kinase inhibitor blocks Mre11/Rad50-dependent DNA tethering in vitro and in cell-free extracts, indicating that adenylate kinase activity by Mre11/Rad50 promotes DNA-DNA associations. We propose a model for Rad50 that incorporates both ATPase and adenylate kinase reactions as critical activities that regulate Rad50 functions.

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Year:  2007        PMID: 17349953      PMCID: PMC3050042          DOI: 10.1016/j.molcel.2007.01.028

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  46 in total

Review 1.  ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules in organisms from bacteria to humans.

Authors:  I B Holland; M A Blight
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Suppression of gross chromosomal rearrangements by the multiple functions of the Mre11-Rad50-Xrs2 complex in Saccharomyces cerevisiae.

Authors:  Stephanie Smith; Amitabha Gupta; Richard D Kolodner; Kyungjae Myung
Journal:  DNA Repair (Amst)       Date:  2005-05-02

3.  ATM activation by DNA double-strand breaks through the Mre11-Rad50-Nbs1 complex.

Authors:  Ji-Hoon Lee; Tanya T Paull
Journal:  Science       Date:  2005-03-24       Impact factor: 47.728

4.  Two-step activation of ATM by DNA and the Mre11-Rad50-Nbs1 complex.

Authors:  Aude Dupré; Louise Boyer-Chatenet; Jean Gautier
Journal:  Nat Struct Mol Biol       Date:  2006-04-23       Impact factor: 15.369

5.  Nucleotide-binding domains of cystic fibrosis transmembrane conductance regulator, an ABC transporter, catalyze adenylate kinase activity but not ATP hydrolysis.

Authors:  Christian H Gross; Norzehan Abdul-Manan; John Fulghum; Judith Lippke; Xun Liu; Prakash Prabhakar; Debra Brennan; Melissa Swope Willis; Carlos Faerman; Patrick Connelly; Scott Raybuck; Jonathan Moore
Journal:  J Biol Chem       Date:  2005-12-16       Impact factor: 5.157

6.  Studies on adenine and adenosine metabolism by intact human erythrocytes using high performance liquid chromatography.

Authors:  B M Dean; D Perrett
Journal:  Biochim Biophys Acta       Date:  1976-06-23

7.  The Mre11/Rad50/Xrs2 complex and non-homologous end-joining of incompatible ends in S. cerevisiae.

Authors:  Xiaoming Zhang; Tanya T Paull
Journal:  DNA Repair (Amst)       Date:  2005-07-25

8.  RAD50 protein of S.cerevisiae exhibits ATP-dependent DNA binding.

Authors:  W E Raymond; N Kleckner
Journal:  Nucleic Acids Res       Date:  1993-08-11       Impact factor: 16.971

9.  Depression of cell metabolism and proliferation by membrane-permeable and -impermeable modulators: role for AMP-to-ATP ratio.

Authors:  Michael A Menze; Matthew J Clavenna; Steven C Hand
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2004-09-30       Impact factor: 3.619

10.  Effect of amino acid substitutions in the rad50 ATP binding domain on DNA double strand break repair in yeast.

Authors:  Ling Chen; Kelly M Trujillo; Stephen Van Komen; Dong Hyun Roh; Lumir Krejci; L Kevin Lewis; Michael A Resnick; Patrick Sung; Alan E Tomkinson
Journal:  J Biol Chem       Date:  2004-11-16       Impact factor: 5.157

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  58 in total

1.  Saccharomyces cerevisiae Mre11/Rad50/Xrs2 and Ku proteins regulate association of Exo1 and Dna2 with DNA breaks.

Authors:  Eun Yong Shim; Woo-Hyun Chung; Matthew L Nicolette; Yu Zhang; Melody Davis; Zhu Zhu; Tanya T Paull; Grzegorz Ira; Sang Eun Lee
Journal:  EMBO J       Date:  2010-09-10       Impact factor: 11.598

2.  Biochemical characterization of bacteriophage T4 Mre11-Rad50 complex.

Authors:  Timothy J Herdendorf; Dustin W Albrecht; Stephen J Benkovic; Scott W Nelson
Journal:  J Biol Chem       Date:  2010-11-15       Impact factor: 5.157

3.  ATP-dependent DNA binding, unwinding, and resection by the Mre11/Rad50 complex.

Authors:  Yaqi Liu; Sihyun Sung; Youngran Kim; Fuyang Li; Gwanghyun Gwon; Aera Jo; Ae-Kyoung Kim; Taeyoon Kim; Ok-Kyu Song; Sang Eun Lee; Yunje Cho
Journal:  EMBO J       Date:  2015-12-30       Impact factor: 11.598

Review 4.  Mre11-Rad50-Nbs1 conformations and the control of sensing, signaling, and effector responses at DNA double-strand breaks.

Authors:  Gareth J Williams; Susan P Lees-Miller; John A Tainer
Journal:  DNA Repair (Amst)       Date:  2010-10-28

Review 5.  The multiple roles of the Mre11 complex for meiotic recombination.

Authors:  Valérie Borde
Journal:  Chromosome Res       Date:  2007       Impact factor: 5.239

6.  Sae2 is an endonuclease that processes hairpin DNA cooperatively with the Mre11/Rad50/Xrs2 complex.

Authors:  Bettina M Lengsfeld; Alison J Rattray; Venugopal Bhaskara; Rodolfo Ghirlando; Tanya T Paull
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

7.  Visualization of local DNA unwinding by Mre11/Rad50/Nbs1 using single-molecule FRET.

Authors:  Brian Cannon; Jeffrey Kuhnlein; Soo-Hyun Yang; Anita Cheng; Detlev Schindler; Jeremy M Stark; Rick Russell; Tanya T Paull
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

8.  The P. furiosus mre11/rad50 complex promotes 5' strand resection at a DNA double-strand break.

Authors:  Ben B Hopkins; Tanya T Paull
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  Mutation of Conserved Mre11 Residues Alter Protein Dynamics to Separate Nuclease Functions.

Authors:  Samiur Rahman; Mahtab Beikzadeh; Marella D Canny; Navneet Kaur; Michael P Latham
Journal:  J Mol Biol       Date:  2020-04-01       Impact factor: 5.469

10.  53BP1 promotes ATM activity through direct interactions with the MRN complex.

Authors:  Ji-Hoon Lee; Aaron A Goodarzi; Penny A Jeggo; Tanya T Paull
Journal:  EMBO J       Date:  2009-12-10       Impact factor: 11.598

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