Literature DB >> 17347520

Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations.

Yosuke Koga1, Hiroyuki Morii.   

Abstract

This review deals with the in vitro biosynthesis of the characteristics of polar lipids in archaea along with preceding in vivo studies. Isoprenoid chains are synthesized through the classical mevalonate pathway, as in eucarya, with minor modifications in some archaeal species. Most enzymes involved in the pathway have been identified enzymatically and/or genomically. Three of the relevant enzymes are found in enzyme families different from the known enzymes. The order of reactions in the phospholipid synthesis pathway (glycerophosphate backbone formation, linking of glycerophosphate with two radyl chains, activation by CDP, and attachment of common polar head groups) is analogous to that of bacteria. sn-Glycerol-1-phosphate dehydrogenase is responsible for the formation of the sn-glycerol-1-phosphate backbone of phospholipids in all archaea. After the formation of two ether bonds, CDP-archaeol acts as a common precursor of various archaeal phospholipid syntheses. Various phospholipid-synthesizing enzymes from archaea and bacteria belong to the same large CDP-alcohol phosphatidyltransferase family. In short, the first halves of the phospholipid synthesis pathways play a role in synthesis of the characteristic structures of archaeal and bacterial phospholipids, respectively. In the second halves of the pathways, the polar head group-attaching reactions and enzymes are homologous in both domains. These are regarded as revealing the hybrid nature of phospholipid biosynthesis. Precells proposed by Wächtershäuser are differentiated into archaea and bacteria by spontaneous segregation of enantiomeric phospholipid membranes (with sn-glycerol-1-phosphate and sn-glycerol-3-phosphate backbones) and the fusion and fission of precells. Considering the nature of the phospholipid synthesis pathways, we here propose that common phospholipid polar head groups were present in precells before the differentiation into archaea and bacteria.

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Year:  2007        PMID: 17347520      PMCID: PMC1847378          DOI: 10.1128/MMBR.00033-06

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  86 in total

1.  Cloning, expression, and characterization of cis-polyprenyl diphosphate synthase from the thermoacidophilic archaeon Sulfolobus acidocaldarius.

Authors:  H Hemmi; S Yamashita; T Shimoyama; T Nakayama; T Nishino
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

2.  The glycerol dehydrogenases of Pseudomonas salinaria, Vibrio costicolus, and Escherichia coli in relation to bacterial halophilism.

Authors:  R M BAXTER; N E GIBBONS
Journal:  Can J Biochem Physiol       Date:  1954-05

3.  Sequence comparisons reveal two classes of 3-hydroxy-3-methylglutaryl coenzyme A reductase.

Authors:  D A Bochar; C V Stauffacher; V W Rodwell
Journal:  Mol Genet Metab       Date:  1999-02       Impact factor: 4.797

4.  Ancestral lipid biosynthesis and early membrane evolution.

Authors:  Juli Peretó; Purificación López-García; David Moreira
Journal:  Trends Biochem Sci       Date:  2004-09       Impact factor: 13.807

5.  Transfer of pro-R hydrogen from NADH to dihydroxyacetonephosphate by sn-glycerol-1-phosphate dehydrogenase from the archaeon Methanothermobacter thermautotrophicus.

Authors:  Yosuke Koga; Nobuhito Sone; Shunsuke Noguchi; Hiroyuki Morii
Journal:  Biosci Biotechnol Biochem       Date:  2003-07       Impact factor: 2.043

6.  Morphological variation of new Thermoplasma acidophilum isolates from Japanese hot springs.

Authors:  M Yasuda; H Oyaizu; A Yamagishi; T Oshima
Journal:  Appl Environ Microbiol       Date:  1995-09       Impact factor: 4.792

7.  Potassium-stimulating mechanism of geranylgeranyl diphosphate synthase of Methanobacterium thermoformicicum SF-4.

Authors:  A Tachibana; T Tanaka; M Taniguchi; S Oi
Journal:  J Biochem       Date:  1993-09       Impact factor: 3.387

8.  Asymmetrical topology of diether- and tetraether-type polar lipids in membranes of Methanobacterium thermoautotrophicum cells.

Authors:  H Morii; Y Koga
Journal:  J Biol Chem       Date:  1994-04-08       Impact factor: 5.157

9.  A novel prenyltransferase, farnesylgeranyl diphosphate synthase, from the haloalkaliphilic archaeon, Natronobacterium pharaonis.

Authors:  A Tachibana
Journal:  FEBS Lett       Date:  1994-03-21       Impact factor: 4.124

10.  Novel polar lipids from the methanogen Methanospirillum hungatei GP1.

Authors:  S C Kushwaha; M Kates; G D Sprott; I C Smith
Journal:  Biochim Biophys Acta       Date:  1981-04-23
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  96 in total

1.  Calditol-linked membrane lipids are required for acid tolerance in Sulfolobus acidocaldarius.

Authors:  Zhirui Zeng; Xiao-Lei Liu; Jeremy H Wei; Roger E Summons; Paula V Welander
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-05       Impact factor: 11.205

2.  The major lipid cores of the archaeon Ignisphaera aggregans: implications for the phylogeny and biosynthesis of glycerol monoalkyl glycerol tetraether isoprenoid lipids.

Authors:  Chris S Knappy; Charlotte E M Nunn; Hugh W Morgan; Brendan J Keely
Journal:  Extremophiles       Date:  2011-06-01       Impact factor: 2.395

Review 3.  Lipidomic analysis of bacterial plasmalogens.

Authors:  Tomáš Řezanka; Zdena Křesinová; Irena Kolouchová; Karel Sigler
Journal:  Folia Microbiol (Praha)       Date:  2012-07-05       Impact factor: 2.099

Review 4.  Toward understanding protocell mechanosensation.

Authors:  Daniel Balleza
Journal:  Orig Life Evol Biosph       Date:  2010-11-17       Impact factor: 1.950

5.  Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids.

Authors:  Qingping Xu; Tadashi Eguchi; Irimpan I Mathews; Christopher L Rife; Hsiu-Ju Chiu; Carol L Farr; Julie Feuerhelm; Lukasz Jaroszewski; Heath E Klock; Mark W Knuth; Mitchell D Miller; Dana Weekes; Marc-André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  J Mol Biol       Date:  2010-10-01       Impact factor: 5.469

Review 6.  The plasma membrane as a capacitor for energy and metabolism.

Authors:  Supriyo Ray; Adam Kassan; Anna R Busija; Padmini Rangamani; Hemal H Patel
Journal:  Am J Physiol Cell Physiol       Date:  2015-11-25       Impact factor: 4.249

7.  Geranylgeranyl reductase and ferredoxin from Methanosarcina acetivorans are required for the synthesis of fully reduced archaeal membrane lipid in Escherichia coli cells.

Authors:  Keisuke Isobe; Takuya Ogawa; Kana Hirose; Takeru Yokoi; Tohru Yoshimura; Hisashi Hemmi
Journal:  J Bacteriol       Date:  2013-11-08       Impact factor: 3.490

8.  Phylogenomic reconstruction of archaeal fatty acid metabolism.

Authors:  Daria V Dibrova; Michael Y Galperin; Armen Y Mulkidjanian
Journal:  Environ Microbiol       Date:  2014-04       Impact factor: 5.491

9.  A thermostable dolichol phosphoryl mannose synthase responsible for glycoconjugate synthesis of the hyperthermophilic archaeon Pyrococcus horikoshii.

Authors:  Yuji Urushibata; Shogo Ebisu; Ikuo Matsui
Journal:  Extremophiles       Date:  2008-06-18       Impact factor: 2.395

Review 10.  A re-evaluation of the archaeal membrane lipid biosynthetic pathway.

Authors:  Laura Villanueva; Jaap S Sinninghe Damsté; Stefan Schouten
Journal:  Nat Rev Microbiol       Date:  2014-05-07       Impact factor: 60.633

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