Literature DB >> 17345014

Sensitivity-optimized experiment for the measurement of residual dipolar couplings between amide protons.

Paul Schanda1, Ewen Lescop, Mirjam Falge, Rémy Sounier, Jérôme Boisbouvier, Bernhard Brutscher.   

Abstract

High signal to noise is a necessity for the quantification of NMR spectral parameters to be translated into accurate and precise restraints on protein structure and dynamics. An important source of long-range structural information is obtained from (1)H-(1)H residual dipolar couplings (RDCs) measured for weakly aligned molecules. For sensitivity reasons, such measurements are generally performed on highly deuterated protein samples. Here we show that high sensitivity is also obtained for protonated protein samples if the pulse schemes are optimized in terms of longitudinal relaxation efficiency and J-mismatch compensated coherence transfer. The new sensitivity-optimized quantitative J-correlation experiment yields important signal gains reaching factors of 1.5 to 8 for individual correlation peaks when compared to previously proposed pulse schemes.

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Year:  2007        PMID: 17345014     DOI: 10.1007/s10858-006-9138-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.582


  26 in total

1.  Hadamard frequency-encoded SOFAST-HMQC for ultrafast two-dimensional protein NMR.

Authors:  Paul Schanda; Bernhard Brutscher
Journal:  J Magn Reson       Date:  2005-11-02       Impact factor: 2.229

2.  Extended flip-back schemes for sensitivity enhancement in multidimensional HSQC-type out-and-back experiments.

Authors:  Tammo Diercks; Mark Daniels; Robert Kaptein
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

3.  Solution structure of the sulfite reductase flavodoxin-like domain from Escherichia coli.

Authors:  Nathalie Sibille; Martin Blackledge; Bernhard Brutscher; Jacques Covès; Beate Bersch
Journal:  Biochemistry       Date:  2005-06-28       Impact factor: 3.162

4.  Speeding up three-dimensional protein NMR experiments to a few minutes.

Authors:  Paul Schanda; Hélène Van Melckebeke; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2006-07-19       Impact factor: 15.419

5.  Direct observation of dipolar couplings between distant protons in weakly aligned nucleic acids.

Authors:  Jérôme Boisbouvier; Frank Delaglio; Ad Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-12       Impact factor: 11.205

6.  SOFAST-HMQC experiments for recording two-dimensional heteronuclear correlation spectra of proteins within a few seconds.

Authors:  Paul Schanda; Eriks Kupce; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

7.  Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds.

Authors:  Paul Schanda; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

Review 8.  Measurement of homo- and heteronuclear J couplings from quantitative J correlation.

Authors:  A Bax; G W Vuister; S Grzesiek; F Delaglio; A C Wang; R Tschudin; G Zhu
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

9.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

10.  Longitudinal (1)H relaxation optimization in TROSY NMR spectroscopy.

Authors:  Konstantin Pervushin; Beat Vögeli; Alexander Eletsky
Journal:  J Am Chem Soc       Date:  2002-10-30       Impact factor: 15.419

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  3 in total

1.  Very large residual dipolar couplings from deuterated ubiquitin.

Authors:  Joshua M Ward; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2012-07-25       Impact factor: 2.835

2.  Measurement of imino 1H-1H residual dipolar couplings in RNA.

Authors:  Michael P Latham; Arthur Pardi
Journal:  J Biomol NMR       Date:  2008-12-09       Impact factor: 2.835

3.  Bacterial Synthesis and Purification of Normal and Mutant Forms of Human FGFR3 Transmembrane Segment.

Authors:  S A Goncharuk; M V Goncharuk; M L Mayzel; D M Lesovoy; V V Chupin; E V Bocharov; A S Arseniev; M P Kirpichnikov
Journal:  Acta Naturae       Date:  2011-07       Impact factor: 1.845

  3 in total

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