Literature DB >> 17327674

On the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths.

Christoph Mueller-Dieckmann1, Santosh Panjikar, Andrea Schmidt, Simone Mueller, Jochen Kuper, Arie Geerlof, Matthias Wilmanns, Rajesh K Singh, Paul A Tucker, Manfred S Weiss.   

Abstract

23 different crystal forms of 19 different biological macromolecules were examined with respect to their anomalously scattering substructures using diffraction data collected at a wavelength of 2.0 A (6.2 keV). In more than 90% of the cases the substructure was found to contain more than just the protein S atoms. The data presented suggest that chloride, sulfate, phosphate or metal ions from the buffer or even from the purification protocol are frequently bound to the protein molecule and that these ions are often overlooked, especially if they are not bound at full occupancy. Thus, in order to fully describe the macromolecule under study, it seems desirable that any structure determination be complemented with a long-wavelength data set.

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Year:  2007        PMID: 17327674     DOI: 10.1107/S0907444906055624

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  46 in total

Review 1.  Conformational selection in trypsin-like proteases.

Authors:  Nicola Pozzi; Austin D Vogt; David W Gohara; Enrico Di Cera
Journal:  Curr Opin Struct Biol       Date:  2012-06-03       Impact factor: 6.809

2.  Fast high-pressure freezing of protein crystals in their mother liquor.

Authors:  Anja Burkhardt; Martin Warmer; Saravanan Panneerselvam; Armin Wagner; Athina Zouni; Carina Glöckner; Rudolph Reimer; Heinrich Hohenberg; Alke Meents
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-31

3.  What's in your buffer? Solute altered millisecond motions detected by solution NMR.

Authors:  Madeline Wong; Gennady Khirich; J Patrick Loria
Journal:  Biochemistry       Date:  2013-08-30       Impact factor: 3.162

4.  X-ray investigation of gene-engineered human insulin crystallized from a solution containing polysialic acid.

Authors:  V I Timofeev; R N Chuprov-Netochin; V R Samigina; V V Bezuglov; K A Miroshnikov; I P Kuranova
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-23

Review 5.  Allostery in trypsin-like proteases suggests new therapeutic strategies.

Authors:  David W Gohara; Enrico Di Cera
Journal:  Trends Biotechnol       Date:  2011-07-02       Impact factor: 19.536

6.  Structural basis of bacterial defense against g-type lysozyme-based innate immunity.

Authors:  S Leysen; L Vanderkelen; S D Weeks; C W Michiels; S V Strelkov
Journal:  Cell Mol Life Sci       Date:  2012-10-21       Impact factor: 9.261

7.  In-house zinc SAD phasing at Cu Kα edge.

Authors:  Min-Kyu Kim; Sangmin Lee; Young Jun An; Chang-Sook Jeong; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  Mol Cells       Date:  2013-05-18       Impact factor: 5.034

8.  Protective hinge in insulin opens to enable its receptor engagement.

Authors:  John G Menting; Yanwu Yang; Shu Jin Chan; Nelson B Phillips; Brian J Smith; Jonathan Whittaker; Nalinda P Wickramasinghe; Linda J Whittaker; Vijay Pandyarajan; Zhu-li Wan; Satya P Yadav; Julie M Carroll; Natalie Strokes; Charles T Roberts; Faramarz Ismail-Beigi; Wieslawa Milewski; Donald F Steiner; Virander S Chauhan; Colin W Ward; Michael A Weiss; Michael C Lawrence
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

9.  Cyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride.

Authors:  Albert Guskov; Jan Kern; Azat Gabdulkhakov; Matthias Broser; Athina Zouni; Wolfram Saenger
Journal:  Nat Struct Mol Biol       Date:  2009-02-15       Impact factor: 15.369

10.  Introduction to phasing.

Authors:  Garry L Taylor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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