Literature DB >> 17325043

The 3' untranslated region complex involved in stabilization of human alpha-globin mRNA assembles in the nucleus and serves an independent role as a splice enhancer.

Xinjun Ji1, Jian Kong, Russ P Carstens, Stephen A Liebhaber.   

Abstract

Posttranscriptional controls, mediated primarily by RNA-protein complexes, have the potential to alter multiple steps in RNA processing and function. Human alpha-globin mRNA is bound at a C-rich motif in the 3' untranslated region (3'UTR) by the KH domain protein alpha-globin poly(C)-binding protein (alphaCP). This "alpha-complex" is essential to cytoplasmic stability of alpha-globin mRNA in erythroid cells. Here we report that the 3'UTR alpha-complex also serves an independent nuclear role as a splice enhancer. Consistent with this role, we find that alphaCP binds alpha-globin transcripts prior to splicing. Surprisingly, this binding occurs at C-rich sites within intron I as well as at the 3'UTR C-rich determinant. The intronic and 3'UTR alphaCP complexes appear to have distinct effects on splicing. While intron I complexes repress intron I excision, the 3'UTR complex enhances splicing of the full-length transcript both in vivo and in vitro. In addition to its importance to splicing, nuclear assembly of the 3'UTR alphaCP complex may serve to "prepackage" alpha-globin mRNA with its stabilizing complex prior to cytoplasmic export. Linking nuclear and cytoplasmic controls by the action of a particular RNA-binding protein, as reported here, may represent a modality of general importance in eukaryotic gene regulation.

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Year:  2007        PMID: 17325043      PMCID: PMC1899960          DOI: 10.1128/MCB.02289-05

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  53 in total

1.  The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element.

Authors:  T O Tange; C K Damgaard; S Guth; J Valcárcel; J Kjems
Journal:  EMBO J       Date:  2001-10-15       Impact factor: 11.598

2.  Introns and their positions affect the translational activity of mRNA in plant cells.

Authors:  V Bourdon; A Harvey; D M Lonsdale
Journal:  EMBO Rep       Date:  2001-05       Impact factor: 8.807

Review 3.  Regulation of alpha-globin mRNA stability.

Authors:  Shelly A Waggoner; Stephen A Liebhaber
Journal:  Exp Biol Med (Maywood)       Date:  2003-04

Review 4.  How introns influence and enhance eukaryotic gene expression.

Authors:  Hervé Le Hir; Ajit Nott; Melissa J Moore
Journal:  Trends Biochem Sci       Date:  2003-04       Impact factor: 13.807

5.  In vivo association of the stability control protein alphaCP with actively translating mRNAs.

Authors:  Xinjun Ji; Jian Kong; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2003-02       Impact factor: 4.272

6.  Identification of mRNAs associated with alphaCP2-containing RNP complexes.

Authors:  Shelly A Waggoner; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

7.  The distribution of the Hb constant spring gene in Southeast Asian populations.

Authors:  M Laig; M Pape; J Hundrieser; G Flatz; T Sanguansermsri; B M Das; R Deka; P Yongvanit; N Mularlee
Journal:  Hum Genet       Date:  1990-01       Impact factor: 4.132

8.  BCR-ABL suppresses C/EBPalpha expression through inhibitory action of hnRNP E2.

Authors:  Danilo Perrotti; Vincenzo Cesi; Rossana Trotta; Clara Guerzoni; Giorgia Santilli; Kenneth Campbell; Angela Iervolino; Fabrizio Condorelli; Carlo Gambacorti-Passerini; Michael A Caligiuri; Bruno Calabretta
Journal:  Nat Genet       Date:  2001-12-20       Impact factor: 38.330

Review 9.  The poly(C)-binding proteins: a multiplicity of functions and a search for mechanisms.

Authors:  Aleksandr V Makeyev; Stephen A Liebhaber
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

10.  The KH-domain protein alpha CP has a direct role in mRNA stabilization independent of its cognate binding site.

Authors:  Jian Kong; Xinjun Ji; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2003-02       Impact factor: 4.272

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  22 in total

1.  An RNA-protein complex links enhanced nuclear 3' processing with cytoplasmic mRNA stabilization.

Authors:  Xinjun Ji; Jian Kong; Stephen A Liebhaber
Journal:  EMBO J       Date:  2011-05-27       Impact factor: 11.598

2.  Poly(C)-Binding Protein Pcbp2 Enables Differentiation of Definitive Erythropoiesis by Directing Functional Splicing of the Runx1 Transcript.

Authors:  Louis R Ghanem; Andrew Kromer; Ian M Silverman; Xinjun Ji; Matthew Gazzara; Nhu Nguyen; Gabrielle Aguilar; Massimo Martinelli; Yoseph Barash; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2018-07-30       Impact factor: 4.272

3.  A cytosine-rich splice regulatory determinant enforces functional processing of the human α-globin gene transcript.

Authors:  Xinjun Ji; Jesse Humenik; Stephen A Liebhaber
Journal:  Blood       Date:  2019-03-04       Impact factor: 22.113

4.  The poly(rC)-binding protein alphaCP2 is a noncanonical factor in X. laevis cytoplasmic polyadenylation.

Authors:  Melanie R Vishnu; Marina Sumaroka; Peter S Klein; Stephen A Liebhaber
Journal:  RNA       Date:  2011-03-28       Impact factor: 4.942

5.  αCP Poly(C) binding proteins act as global regulators of alternative polyadenylation.

Authors:  Xinjun Ji; Ji Wan; Melanie Vishnu; Yi Xing; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2013-04-29       Impact factor: 4.272

6.  αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.

Authors:  Xinjun Ji; Juw Won Park; Emad Bahrami-Samani; Lan Lin; Christopher Duncan-Lewis; Gordon Pherribo; Yi Xing; Stephen A Liebhaber
Journal:  Nucleic Acids Res       Date:  2016-02-20       Impact factor: 16.971

7.  Specific enrichment of the RNA-binding proteins PCBP1 and PCBP2 in chief cells of the murine gastric mucosa.

Authors:  Louis R Ghanem; Priya Chatterji; Stephen A Liebhaber
Journal:  Gene Expr Patterns       Date:  2014-01-28       Impact factor: 1.224

8.  UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements.

Authors:  Donald E Riley; John N Krieger
Journal:  Gene       Date:  2008-10-10       Impact factor: 3.688

9.  Neither DNA hypomethylation nor changes in the kinetics of erythroid differentiation explain 5-azacytidine's ability to induce human fetal hemoglobin.

Authors:  Rodwell Mabaera; Michael R Greene; Christine A Richardson; Sarah J Conine; Courtney D Kozul; Christopher H Lowrey
Journal:  Blood       Date:  2007-10-04       Impact factor: 22.113

10.  The Poly(C) Binding Protein Pcbp2 and Its Retrotransposed Derivative Pcbp1 Are Independently Essential to Mouse Development.

Authors:  Louis R Ghanem; Andrew Kromer; Ian M Silverman; Priya Chatterji; Elizabeth Traxler; Alfredo Penzo-Mendez; Mitchell J Weiss; Ben Z Stanger; Stephen A Liebhaber
Journal:  Mol Cell Biol       Date:  2015-11-02       Impact factor: 4.272

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