Literature DB >> 17322529

Important roles of hydroxylic amino acid residues in the function of Bacillus subtilis adenylosuccinate lyase.

Mark L Segall1, Meghan A Cashman, Roberta F Colman.   

Abstract

Thr(93), Ser(94), Thr(140), and Ser(306) are conserved in all adenylosuccinate lyases (ASL) and are close to other amino acids previously identified by mutagenesis as being in the active site. To test their involvement in the enzyme's function, each of these amino acids was replaced by alanine. All the mutants exhibit circular dichroism spectra which are similar to that of wild-type enzyme, indicating there is no appreciable change in secondary structure. T93A exhibits 0.5% of the V(max) of wild-type ASL with a 10-fold increase in K(m) for adenylosuccinate. S94A has 65% of the V(max) of wild-type ASL with little change in K(m). T140A exhibits 0.03% of the activity of wild-type enzyme with an 11-fold increase in K(m). S306A has 0.4% of the V(max) of wild-type ASL with a sevenfold increase in K(m). Measurements of the pH-V(max) profile reveal a pK(2) value for S94A of 7.83 and S306A of 7.65, in contrast to 8.24 for the wild-type enzyme and 8.42 for T93A. Thr(93) may orient adenylosuccinate optimally for catalysis, while Ser(94) stabilizes protonated His(89), a determinant of pK(2). Thr(140) may, through hydrogen bonding, interact with Asn(270), an amino acid essential for catalysis. Ser(306) may be involved in a hydrogen bond network that ultimately stabilizes protonated His(68), which is probably the general acid in the reaction of enzyme with substrate. The results of this paper demonstrate the importance in the catalytic function of ASL of hydrogen bonds and hydrogen bonding networks involving serine and threonine.

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Year:  2007        PMID: 17322529      PMCID: PMC2203318          DOI: 10.1110/ps.062650007

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  22 in total

1.  Expression, purification, and characterization of stable, recombinant human adenylosuccinate lyase.

Authors:  Peychii Lee; Roberta F Colman
Journal:  Protein Expr Purif       Date:  2006-08-09       Impact factor: 1.650

2.  Role of the intramolecular hydrogen bond network in the inhibitory power of chymotrypsin inhibitor 2.

Authors:  Evette S Radisky; Chia-Jung Karen Lu; Gene Kwan; Daniel E Koshland
Journal:  Biochemistry       Date:  2005-05-10       Impact factor: 3.162

3.  His68 and His141 are critical contributors to the intersubunit catalytic site of adenylosuccinate lyase of Bacillus subtilis.

Authors:  T T Lee; C Worby; Z Q Bao; J E Dixon; R F Colman
Journal:  Biochemistry       Date:  1999-01-05       Impact factor: 3.162

Review 4.  Adenylosuccinate lyase deficiency.

Authors:  Erin K Spiegel; Roberta F Colman; David Patterson
Journal:  Mol Genet Metab       Date:  2006-07-12       Impact factor: 4.797

5.  Mutation analysis in adenylosuccinate lyase deficiency: eight novel mutations in the re-evaluated full ADSL coding sequence.

Authors:  S Marie; H Cuppens; M Heuterspreute; M Jaspers; E Z Tola; X X Gu; E Legius; M F Vincent; J Jaeken; J J Cassiman; G Van den Berghe
Journal:  Hum Mutat       Date:  1999       Impact factor: 4.878

6.  Identification of His141 in the active site of Bacillus subtilis adenylosuccinate lyase by affinity labeling with 6-(4-bromo-2,3-dioxobutyl)thioadenosine 5'-monophosphate.

Authors:  T T Lee; C Worby; J E Dixon; R F Colman
Journal:  J Biol Chem       Date:  1997-01-03       Impact factor: 5.157

7.  Proposal for a hydrogen bond network in the active site of the prototypic gamma-class carbonic anhydrase.

Authors:  Sabrina A Zimmerman; James G Ferry
Journal:  Biochemistry       Date:  2006-04-25       Impact factor: 3.162

8.  Tyrosine 387 and arginine 404 are critical in the hydrolytic mechanism of Escherichia coli aminopeptidase P.

Authors:  Shu-Chuan Jao; Li-Fang Huang; Shu-Mei Hwang; Wen-Shan Li
Journal:  Biochemistry       Date:  2006-02-14       Impact factor: 3.162

9.  Adenylosuccinase deficiency: an inborn error of purine nucleotide synthesis.

Authors:  J Jaeken; S K Wadman; M Duran; F J van Sprang; F A Beemer; R A Holl; P M Theunissen; P de Cock; F van den Bergh; M F Vincent
Journal:  Eur J Pediatr       Date:  1988-11       Impact factor: 3.183

10.  Effect of Asp69 and Arg310 on the pK of His68, a key catalytic residue of adenylosuccinate lyase.

Authors:  Sharmila Sivendran; Mark L Segall; Pumtiwitt C Rancy; Roberta F Colman
Journal:  Protein Sci       Date:  2007-06-28       Impact factor: 6.725

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  4 in total

1.  In vitro hybridization and separation of hybrids of human adenylosuccinate lyase from wild-type and disease-associated mutant enzymes.

Authors:  Lushanti De Zoysa Ariyananda; Christina Antonopoulos; Jenna Currier; Roberta F Colman
Journal:  Biochemistry       Date:  2011-02-03       Impact factor: 3.162

2.  Substrate and product complexes of Escherichia coli adenylosuccinate lyase provide new insights into the enzymatic mechanism.

Authors:  May Tsai; Jason Koo; Patrick Yip; Roberta F Colman; Mark L Segall; P Lynne Howell
Journal:  J Mol Biol       Date:  2007-05-04       Impact factor: 5.469

3.  Effect of Asp69 and Arg310 on the pK of His68, a key catalytic residue of adenylosuccinate lyase.

Authors:  Sharmila Sivendran; Mark L Segall; Pumtiwitt C Rancy; Roberta F Colman
Journal:  Protein Sci       Date:  2007-06-28       Impact factor: 6.725

4.  Structure of Staphylococcus aureus adenylosuccinate lyase (PurB) and assessment of its potential as a target for structure-based inhibitor discovery.

Authors:  Paul K Fyfe; Alice Dawson; Marie Theres Hutchison; Scott Cameron; William N Hunter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-09
  4 in total

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