Literature DB >> 17322354

Finely orchestrated movements: evolution of the ribosomal RNA genes.

Thomas H Eickbush1, Danna G Eickbush.   

Abstract

Evolution of the tandemly repeated ribosomal RNA (rRNA) genes is intriguing because in each species all units within the array are highly uniform in sequence but that sequence differs between species. In this review we summarize the origins of the current models to explain this process of concerted evolution, emphasizing early studies of recombination in yeast and more recent studies in Drosophila and mammalian systems. These studies suggest that unequal crossover is the major driving force in the evolution of the rRNA genes with sister chromatid exchange occurring more often than exchange between homologs. Gene conversion is also believed to play a role; however, direct evidence for its involvement has not been obtained. Remarkably, concerted evolution is so well orchestrated that even transposable elements that insert into a large fraction of the rRNA genes appear to have little effect on the process. Finally, we summarize data that suggest that recombination in the rDNA locus of higher eukaryotes is sufficiently frequent to monitor changes within a few generations.

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Year:  2007        PMID: 17322354      PMCID: PMC1800602          DOI: 10.1534/genetics.107.071399

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  51 in total

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Journal:  Mol Biol Evol       Date:  2004-06-16       Impact factor: 16.240

2.  Rates of recombination in the ribosomal DNA of apomictically propagated Daphnia obtusa lines.

Authors:  Seanna J McTaggart; Jeffry L Dudycha; Angela Omilian; Teresa J Crease
Journal:  Genetics       Date:  2006-11-16       Impact factor: 4.562

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Journal:  Science       Date:  1976-02-13       Impact factor: 47.728

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Journal:  Nature       Date:  1976-09-02       Impact factor: 49.962

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Journal:  Proc Natl Acad Sci U S A       Date:  1968-06       Impact factor: 11.205

Review 6.  Repeated genes in eukaryotes.

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Journal:  Annu Rev Biochem       Date:  1980       Impact factor: 23.643

7.  Meiotic mapping of yeast ribosomal deoxyribonucleic acid on chromosome XII.

Authors:  T D Petes
Journal:  J Bacteriol       Date:  1979-04       Impact factor: 3.490

8.  Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae.

Authors:  J W Szostak; R Wu
Journal:  Nature       Date:  1980-04-03       Impact factor: 49.962

9.  Unequal meiotic recombination within tandem arrays of yeast ribosomal DNA genes.

Authors:  T D Petes
Journal:  Cell       Date:  1980-03       Impact factor: 41.582

10.  A comparison of the ribosomal DNA's of Xenopus laevis and Xenopus mulleri: the evolution of tandem genes.

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Journal:  J Mol Biol       Date:  1972-01-14       Impact factor: 5.469

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  195 in total

1.  Independently derived targeting of 28S rDNA by A- and D-clade R2 retrotransposons: Plasticity of integration mechanism.

Authors:  Blaine K Thompson; Shawn M Christensen
Journal:  Mob Genet Elements       Date:  2011-05

Review 2.  5S rRNA gene arrangements in protists: a case of nonadaptive evolution.

Authors:  Guy Drouin; Corey Tsang
Journal:  J Mol Evol       Date:  2012-07-11       Impact factor: 2.395

3.  Unusual chromatin state in Rhynchosciara americana (Diptera: Sciaridae).

Authors:  Alejandra Badaracco; Eduardo Gorab
Journal:  Chromosome Res       Date:  2015-12       Impact factor: 5.239

4.  Sequence variation within the rRNA gene loci of 12 Drosophila species.

Authors:  Deborah E Stage; Thomas H Eickbush
Journal:  Genome Res       Date:  2007-11-07       Impact factor: 9.043

5.  Evolution of rDNA in Nicotiana allopolyploids: a potential link between rDNA homogenization and epigenetics.

Authors:  Ales Kovarik; Martina Dadejova; Yoong K Lim; Mark W Chase; James J Clarkson; Sandra Knapp; Andrew R Leitch
Journal:  Ann Bot       Date:  2008-02-29       Impact factor: 4.357

6.  Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster.

Authors:  Gustavo C S Kuhn; Fabio M Sene; Orlando Moreira-Filho; Trude Schwarzacher; John S Heslop-Harrison
Journal:  Chromosome Res       Date:  2008-02-11       Impact factor: 5.239

7.  Quantitative sequence characterization for repetitive DNA content in the supernumerary chromosome of the migratory locust.

Authors:  Francisco J Ruiz-Ruano; Josefa Cabrero; María Dolores López-León; Antonio Sánchez; Juan Pedro M Camacho
Journal:  Chromosoma       Date:  2017-09-04       Impact factor: 4.316

8.  Skin mites in mice (Mus musculus): high prevalence of Myobia sp. (Acari, Arachnida) in Robertsonian mice.

Authors:  Natalia Sastre; Oriol Calvete; Jessica Martínez-Vargas; Nuria Medarde; Joaquim Casellas; Laura Altet; Armand Sánchez; Olga Francino; Jacint Ventura
Journal:  Parasitol Res       Date:  2018-05-04       Impact factor: 2.289

9.  Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing.

Authors:  Stephen A James; Michael J T O'Kelly; David M Carter; Robert P Davey; Alexander van Oudenaarden; Ian N Roberts
Journal:  Genome Res       Date:  2009-01-13       Impact factor: 9.043

10.  Nucleotide sequence heterogeneity in the small subunit ribosomal RNA gene within Theileria equi from horses in Sudan.

Authors:  Bashir Salim; Mohammed A Bakheit; Joseph Kamau; Ichiro Nakamura; Chihiro Sugimoto
Journal:  Parasitol Res       Date:  2009-12-02       Impact factor: 2.289

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