Literature DB >> 17320239

External factors accelerate expression divergence between duplicate genes.

Misook Ha1, Wen-Hsiung Li, Z Jeffrey Chen.   

Abstract

We examined the evolution of expression of duplicate genes in Arabidopsis thaliana, by analyzing 512 data sets of gene expression microarrays and 2022 recent duplicate gene pairs. Expression divergence between gene duplicates is significantly greater in response to environmental stress than to developmental processes. A slow rate of expression divergence during development might offer dosage-dependent selective advantage, whereas rapid expression divergence in response to external changes might accelerate adaptation.

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Year:  2007        PMID: 17320239      PMCID: PMC2065749          DOI: 10.1016/j.tig.2007.02.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  26 in total

1.  The probability of duplicate gene preservation by subfunctionalization.

Authors:  M Lynch; A Force
Journal:  Genetics       Date:  2000-01       Impact factor: 4.562

2.  The evolutionary fate and consequences of duplicate genes.

Authors:  M Lynch; J S Conery
Journal:  Science       Date:  2000-11-10       Impact factor: 47.728

3.  The probability of preservation of a newly arisen gene duplicate.

Authors:  M Lynch; M O'Hely; B Walsh; A Force
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

Review 4.  Relearning our ABCs: new twists on an old model.

Authors:  T Jack
Journal:  Trends Plant Sci       Date:  2001-07       Impact factor: 18.313

Review 5.  Cell signaling during cold, drought, and salt stress.

Authors:  Liming Xiong; Karen S Schumaker; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2002       Impact factor: 11.277

6.  A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.

Authors:  Guillaume Blanc; Karsten Hokamp; Kenneth H Wolfe
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

7.  Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes.

Authors:  Brian C Thomas; Brent Pedersen; Michael Freeling
Journal:  Genome Res       Date:  2006-06-07       Impact factor: 9.043

8.  Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray.

Authors:  M Seki; M Narusaka; H Abe; M Kasuga; K Yamaguchi-Shinozaki; P Carninci; Y Hayashizaki; K Shinozaki
Journal:  Plant Cell       Date:  2001-01       Impact factor: 11.277

9.  The origins of genomic duplications in Arabidopsis.

Authors:  T J Vision; D G Brown; S D Tanksley
Journal:  Science       Date:  2000-12-15       Impact factor: 47.728

10.  Role of duplicate genes in genetic robustness against null mutations.

Authors:  Zhenglong Gu; Lars M Steinmetz; Xun Gu; Curt Scharfe; Ronald W Davis; Wen-Hsiung Li
Journal:  Nature       Date:  2003-01-02       Impact factor: 49.962

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  33 in total

1.  G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis.

Authors:  Michael Freeling; Lakshmi Rapaka; Eric Lyons; Brent Pedersen; Brian C Thomas
Journal:  Plant Cell       Date:  2007-05-11       Impact factor: 11.277

Review 2.  Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids.

Authors:  Z Jeffrey Chen
Journal:  Annu Rev Plant Biol       Date:  2007       Impact factor: 26.379

3.  Expression diversity and evolutionary dynamics of rice duplicate genes.

Authors:  Won Cheol Yim; Byung-Moo Lee; Cheol Seong Jang
Journal:  Mol Genet Genomics       Date:  2009-01-31       Impact factor: 3.291

Review 4.  Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes.

Authors:  Patrick P Edger; J Chris Pires
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

Review 5.  Molecular mechanisms governing differential robustness of development and environmental responses in plants.

Authors:  Jennifer Lachowiec; Christine Queitsch; Daniel J Kliebenstein
Journal:  Ann Bot       Date:  2015-10-14       Impact factor: 4.357

6.  Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice.

Authors:  Sara Movahedi; Yves Van de Peer; Klaas Vandepoele
Journal:  Plant Physiol       Date:  2011-05-13       Impact factor: 8.340

7.  Recent gene duplication and subfunctionalization produced a mitochondrial GrpE, the nucleotide exchange factor of the Hsp70 complex, specialized in thermotolerance to chronic heat stress in Arabidopsis.

Authors:  Catherine Hu; Siou-ying Lin; Wen-tzu Chi; Yee-yung Charng
Journal:  Plant Physiol       Date:  2011-11-29       Impact factor: 8.340

8.  Expression Pattern Similarities Support the Prediction of Orthologs Retaining Common Functions after Gene Duplication Events.

Authors:  Malay Das; Georg Haberer; Arup Panda; Shayani Das Laha; Tapas Chandra Ghosh; Anton R Schäffner
Journal:  Plant Physiol       Date:  2016-06-14       Impact factor: 8.340

9.  Assessing the evolution of gene expression using microarray data.

Authors:  Owen Z Woody; Andrew C Doxey; Brendan J McConkey
Journal:  Evol Bioinform Online       Date:  2008-04-24       Impact factor: 1.625

10.  Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes.

Authors:  Chungoo Park; Kateryna D Makova
Journal:  Genome Biol       Date:  2009-01-28       Impact factor: 13.583

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