Literature DB >> 17317149

Stochastic gene expression: from single molecules to the proteome.

Benjamin B Kaufmann1, Alexander van Oudenaarden.   

Abstract

Protein production involves a series of stochastic chemical steps. One consequence of this fact is that the copy number of any given protein varies substantially from cell to cell, even within isogenic populations. Recent experiments have measured this variation for thousands of different proteins, revealing a linear relationship between variance and mean level of expression for much of the proteome. This simple relationship is frequently thought to arise from the random production and degradation of mRNAs, but several lines of evidence suggest that infrequent gene activation events also bear responsibility. In support of the latter hypothesis, single-molecule experiments have demonstrated that mRNA transcripts are often produced in large bursts. Moreover, the temporal pattern of these bursts appears to be correlated for chromosomally proximal genes, suggesting the existence of an upstream player.

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Year:  2007        PMID: 17317149     DOI: 10.1016/j.gde.2007.02.007

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  69 in total

1.  Reconciling molecular regulatory mechanisms with noise patterns of bacterial metabolic promoters in induced and repressed states.

Authors:  Matthew L Ferguson; Dominique Le Coq; Matthieu Jules; Stéphane Aymerich; Ovidiu Radulescu; Nathalie Declerck; Catherine A Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-21       Impact factor: 11.205

2.  Quantifying mRNA synthesis and decay rates using small RNAs.

Authors:  Vlad Elgart; Tao Jia; Rahul Kulkarni
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

3.  Stochastic variation: from single cells to superorganisms.

Authors:  Maria L Kilfoil; Paul Lasko; Ehab Abouheif
Journal:  HFSP J       Date:  2009-10-09

4.  TATA is a modular component of synthetic promoters.

Authors:  Ilaria Mogno; Francesco Vallania; Robi D Mitra; Barak A Cohen
Journal:  Genome Res       Date:  2010-07-13       Impact factor: 9.043

5.  Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism.

Authors:  Ty C Voss; R Louis Schiltz; Myong-Hee Sung; Paul M Yen; John A Stamatoyannopoulos; Simon C Biddie; Thomas A Johnson; Tina B Miranda; Sam John; Gordon L Hager
Journal:  Cell       Date:  2011-08-11       Impact factor: 41.582

6.  Transcriptional control of noise in gene expression.

Authors:  Alvaro Sánchez; Jané Kondev
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-19       Impact factor: 11.205

7.  Elongation dynamics shape bursty transcription and translation.

Authors:  Maciej Dobrzynski; Frank J Bruggeman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

8.  The mean frequency of transcriptional bursting and its variation in single cells.

Authors:  Moxun Tang
Journal:  J Math Biol       Date:  2009-03-10       Impact factor: 2.259

9.  Photosynthetic metabolism of C3 plants shows highly cooperative regulation under changing environments: a systems biological analysis.

Authors:  Ruoyu Luo; Haibin Wei; Lin Ye; Kankan Wang; Fan Chen; Lijun Luo; Lei Liu; Yuanyuan Li; M James C Crabbe; Li Jin; Yixue Li; Yang Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-07       Impact factor: 11.205

10.  Combinatorial probabilistic chromatin interactions produce transcriptional heterogeneity.

Authors:  Ty C Voss; R Louis Schiltz; Myong-Hee Sung; Thomas A Johnson; Sam John; Gordon L Hager
Journal:  J Cell Sci       Date:  2009-01-06       Impact factor: 5.285

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