Literature DB >> 17292925

Hypoxia-induced and stress-specific changes in chromatin structure and function.

Amber Buescher Johnson1, Michelle Craig Barton.   

Abstract

Cellular adaptation to stress relies on specific, regulated responses to evoke changes in gene expression. Stresses such as hypoxia, heat shock, oxidative stress and DNA-damage activate signaling cascades that ultimately lead to either induction or repression of stress-responsive genes. In this review, we concentrate on the mechanisms by which stress-induced signaling promotes alterations in chromatin structure, whether the read-out is activation or repression of transcription. Specific alterations in chromatin are highly regulated and dictated by the type of imposed stress. Our primary focus is on the types of chromatin alterations that occur under hypoxic conditions, which exist within a majority of tumors, and to compare these to changes in chromatin structure that occur in response to a wide variety of cellular stresses.

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Year:  2007        PMID: 17292925      PMCID: PMC1924842          DOI: 10.1016/j.mrfmmm.2006.10.007

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  122 in total

1.  Regulation and destabilization of HIF-1alpha by ARD1-mediated acetylation.

Authors:  Joo Won Jeong; Moon Kyoung Bae; Mee Young Ahn; Se Hee Kim; Tae Kwon Sohn; Myung Ho Bae; Mi Ae Yoo; Eun Joo Song; Kong Joo Lee; Kyu Won Kim
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

Review 2.  Acetylated, methylated, remodeled: chromatin states for gene regulation.

Authors:  Alexandra Lusser
Journal:  Curr Opin Plant Biol       Date:  2002-10       Impact factor: 7.834

Review 3.  Histone modifications: an assembly line for active chromatin?

Authors:  Axel Imhof
Journal:  Curr Biol       Date:  2003-01-08       Impact factor: 10.834

4.  Structure of factor-inhibiting hypoxia-inducible factor 1: An asparaginyl hydroxylase involved in the hypoxic response pathway.

Authors:  Charles E Dann; Richard K Bruick; Johann Deisenhofer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

5.  Hypoxia-inducible factor (HIF) asparagine hydroxylase is identical to factor inhibiting HIF (FIH) and is related to the cupin structural family.

Authors:  Kirsty S Hewitson; Luke A McNeill; Madeline V Riordan; Ya-Min Tian; Alex N Bullock; Richard W Welford; Jonathan M Elkins; Neil J Oldham; Shoumo Bhattacharya; Jonathan M Gleadle; Peter J Ratcliffe; Christopher W Pugh; Christopher J Schofield
Journal:  J Biol Chem       Date:  2002-05-31       Impact factor: 5.157

6.  Cloning and functional characterization of HDAC11, a novel member of the human histone deacetylase family.

Authors:  Lin Gao; Maria A Cueto; Fred Asselbergs; Peter Atadja
Journal:  J Biol Chem       Date:  2002-04-10       Impact factor: 5.157

Review 7.  O(2) sensing in hypoxic pulmonary vasoconstriction: the mitochondrial door re-opens.

Authors:  Gregory B Waypa; Paul T Schumacker
Journal:  Respir Physiol Neurobiol       Date:  2002-08-22       Impact factor: 1.931

8.  The essential role of Cited2, a negative regulator for HIF-1alpha, in heart development and neurulation.

Authors:  Zhan Yin; Jennifer Haynie; Xiaoming Yang; Baoguang Han; Songsak Kiatchoosakun; Joseph Restivo; Saying Yuan; Nanduri R Prabhakar; Karl Herrup; Ronald A Conlon; Brian D Hoit; Michiko Watanabe; Yu-Chung Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

9.  Functional analysis of hypoxia-inducible factor-1 alpha-mediated transactivation. Identification of amino acid residues critical for transcriptional activation and/or interaction with CREB-binding protein.

Authors:  Jorge L Ruas; Lorenz Poellinger; Teresa Pereira
Journal:  J Biol Chem       Date:  2002-07-19       Impact factor: 5.157

Review 10.  Higher order chromatin degradation: implications for neurodegeneration.

Authors:  Gregory W Konat
Journal:  Neurochem Res       Date:  2002-11       Impact factor: 3.996

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  38 in total

1.  Hypoxia elicits broad and systematic changes in protein subcellular localization.

Authors:  Robert Michael Henke; Ranita Ghosh Dastidar; Ajit Shah; Daniela Cadinu; Xiao Yao; Jagmohan Hooda; Li Zhang
Journal:  Am J Physiol Cell Physiol       Date:  2011-07-13       Impact factor: 4.249

Review 2.  Protein damage by reactive electrophiles: targets and consequences.

Authors:  Daniel C Liebler
Journal:  Chem Res Toxicol       Date:  2007-12-04       Impact factor: 3.739

Review 3.  Environmental preconditioning rejuvenates adult stem cells' proliferation and chondrogenic potential.

Authors:  Ming Pei
Journal:  Biomaterials       Date:  2016-11-25       Impact factor: 12.479

Review 4.  Epigenetic alterations in acute kidney injury.

Authors:  Karol Bomsztyk; Oleg Denisenko
Journal:  Semin Nephrol       Date:  2013-07       Impact factor: 5.299

Review 5.  Steroid receptor coactivators 1, 2, and 3: critical regulators of nuclear receptor activity and steroid receptor modulator (SRM)-based cancer therapy.

Authors:  Amber B Johnson; Bert W O'Malley
Journal:  Mol Cell Endocrinol       Date:  2011-06-01       Impact factor: 4.102

Review 6.  The role of epigenetics in age-related macular degeneration.

Authors:  M Gemenetzi; A J Lotery
Journal:  Eye (Lond)       Date:  2014-09-19       Impact factor: 3.775

Review 7.  The control of histone methylation and gene expression by oxidative stress, hypoxia, and metals.

Authors:  Yana Chervona; Max Costa
Journal:  Free Radic Biol Med       Date:  2012-07-25       Impact factor: 7.376

8.  Hypoxia induces a novel signature of chromatin modifications and global repression of transcription.

Authors:  Amber Buescher Johnson; Nicholas Denko; Michelle Craig Barton
Journal:  Mutat Res       Date:  2008-01-16       Impact factor: 2.433

9.  Febrile-range temperature modifies cytokine gene expression in LPS-stimulated macrophages by differentially modifying NF-{kappa}B recruitment to cytokine gene promoters.

Authors:  Zachary A Cooper; Arundhati Ghosh; Aditi Gupta; Tapan Maity; Ivor J Benjamin; Stefanie N Vogel; Jeffrey D Hasday; Ishwar S Singh
Journal:  Am J Physiol Cell Physiol       Date:  2009-10-21       Impact factor: 4.249

Review 10.  RNA-binding proteins implicated in the hypoxic response.

Authors:  Kiyoshi Masuda; Kotb Abdelmohsen; Myriam Gorospe
Journal:  J Cell Mol Med       Date:  2009-07-06       Impact factor: 5.310

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