Literature DB >> 17291544

ATP-dependent chromatin remodeling factors and DNA damage repair.

Mary Ann Osley1, Toyoko Tsukuda, Jac A Nickoloff.   

Abstract

The organization of eukaryotic DNA into chromatin poses a barrier to all processes that require access of enzymes and regulatory factors to their sites of action. While the majority of studies in this area have concentrated on the role of chromatin in the regulation of transcription, there has been a recent emphasis on the relationship of chromatin to DNA damage repair. In this review, we focus on the role of chromatin in nucleotide excision repair (NER) and double-strand break (DSB) repair. NER and DSB repair use very different enzymatic machineries, and these two modes of DNA damage repair are also differentially affected by chromatin. Only a small number of nucleosomes are likely to be involved in NER, while a more extensive region of chromatin is involved in DSB repair. However, a key feature of both NER and DSB repair pathways is the participation of ATP-dependent chromatin remodeling factors at various points in the repair process. We discuss recent data that have identified roles for SWI/SNF-related chromatin remodeling factors in the two repair pathways.

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Year:  2007        PMID: 17291544      PMCID: PMC1904433          DOI: 10.1016/j.mrfmmm.2006.07.011

Source DB:  PubMed          Journal:  Mutat Res        ISSN: 0027-5107            Impact factor:   2.433


  169 in total

Review 1.  ATP-dependent nucleosome remodelling: factors and functions.

Authors:  Anton Eberharter; Peter B Becker
Journal:  J Cell Sci       Date:  2004-08-01       Impact factor: 5.285

2.  The absence of the yeast chromatin assembly factor Asf1 increases genomic instability and sister chromatid exchange.

Authors:  Félix Prado; Felipe Cortés-Ledesma; Andrés Aguilera
Journal:  EMBO Rep       Date:  2004-04-08       Impact factor: 8.807

Review 3.  Oxidative stress, redox, and the tumor microenvironment.

Authors:  John A Cook; David Gius; David A Wink; Murali C Krishna; Angelo Russo; James B Mitchell
Journal:  Semin Radiat Oncol       Date:  2004-07       Impact factor: 5.934

4.  A conserved N-terminal motif in Rad54 is important for chromatin remodeling and homologous strand pairing.

Authors:  Vassilios Alexiadis; Alexandra Lusser; James T Kadonaga
Journal:  J Biol Chem       Date:  2004-04-22       Impact factor: 5.157

Review 5.  The Mre11 complex and the metabolism of chromosome breaks: the importance of communicating and holding things together.

Authors:  Travis H Stracker; Jan-Willem F Theunissen; Monica Morales; John H J Petrini
Journal:  DNA Repair (Amst)       Date:  2004 Aug-Sep

6.  ATP-dependent remodeling by SWI/SNF and ISWI proteins stimulates V(D)J cleavage of 5 S arrays.

Authors:  Nadja Patenge; Sheryl K Elkin; Marjorie A Oettinger
Journal:  J Biol Chem       Date:  2004-06-16       Impact factor: 5.157

7.  Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

Authors:  Melissa W Adkins; Susan R Howar; Jessica K Tyler
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

8.  Histone H2A phosphorylation controls Crb2 recruitment at DNA breaks, maintains checkpoint arrest, and influences DNA repair in fission yeast.

Authors:  Toru M Nakamura; Li-Lin Du; Christophe Redon; Paul Russell
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

9.  The NEF4 complex regulates Rad4 levels and utilizes Snf2/Swi2-related ATPase activity for nucleotide excision repair.

Authors:  Kerrington L Ramsey; Joshua J Smith; Arindam Dasgupta; Nazif Maqani; Patrick Grant; David T Auble
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

10.  In UV-irradiated Saccharomyces cerevisiae, overexpression of Swi2/Snf2 family member Rad26 increases transcription-coupled repair and repair of the non-transcribed strand.

Authors:  Miriam Bucheli; Kevin Sweder
Journal:  Mol Microbiol       Date:  2004-06       Impact factor: 3.501

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  64 in total

1.  Initiation of DNA double strand break repair: signaling and single-stranded resection dictate the choice between homologous recombination, non-homologous end-joining and alternative end-joining.

Authors:  Anastazja Grabarz; Aurélia Barascu; Josée Guirouilh-Barbat; Bernard S Lopez
Journal:  Am J Cancer Res       Date:  2012-04-21       Impact factor: 6.166

Review 2.  Damage-induced reactivation of cohesin in postreplicative DNA repair.

Authors:  Alexander R Ball; Kyoko Yokomori
Journal:  Bioessays       Date:  2008-01       Impact factor: 4.345

3.  Tip60 is required for DNA interstrand cross-link repair in the Fanconi anemia pathway.

Authors:  James Hejna; Megan Holtorf; Jennie Hines; Lauren Mathewson; Aaron Hemphill; Muhsen Al-Dhalimy; Susan B Olson; Robb E Moses
Journal:  J Biol Chem       Date:  2008-02-08       Impact factor: 5.157

4.  Double-strand DNA breaks recruit the centromeric histone CENP-A.

Authors:  Samantha G Zeitlin; Norman M Baker; Brian R Chapados; Evi Soutoglou; Jean Y J Wang; Michael W Berns; Don W Cleveland
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-28       Impact factor: 11.205

5.  CHD8 is an ATP-dependent chromatin remodeling factor that regulates beta-catenin target genes.

Authors:  Brandi A Thompson; Véronique Tremblay; Grace Lin; Daniel A Bochar
Journal:  Mol Cell Biol       Date:  2008-03-31       Impact factor: 4.272

Review 6.  MYSTs mark chromatin for chromosomal functions.

Authors:  Lorraine Pillus
Journal:  Curr Opin Cell Biol       Date:  2008-05-27       Impact factor: 8.382

Review 7.  Chapter 5. Nuclear actin-related proteins in epigenetic control.

Authors:  Richard B Meagher; Muthugapatti K Kandasamy; Elizabeth C McKinney; Eileen Roy
Journal:  Int Rev Cell Mol Biol       Date:  2009       Impact factor: 6.813

8.  Activation of protein kinase Tel1 through recognition of protein-bound DNA ends.

Authors:  Kenzo Fukunaga; Youngho Kwon; Patrick Sung; Katsunori Sugimoto
Journal:  Mol Cell Biol       Date:  2011-03-14       Impact factor: 4.272

9.  RSC facilitates Rad59-dependent homologous recombination between sister chromatids by promoting cohesin loading at DNA double-strand breaks.

Authors:  Ji-Hyun Oum; Changhyun Seong; Youngho Kwon; Jae-Hoon Ji; Amy Sid; Sreejith Ramakrishnan; Grzegorz Ira; Anna Malkova; Patrick Sung; Sang Eun Lee; Eun Yong Shim
Journal:  Mol Cell Biol       Date:  2011-08-01       Impact factor: 4.272

10.  Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair.

Authors:  Chin-Chuan Chen; Joshua J Carson; Jason Feser; Beth Tamburini; Susan Zabaronick; Jeffrey Linger; Jessica K Tyler
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

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