Literature DB >> 17285676

Plant genomic DNA isolation: an art or a science.

Astha Varma1, Harish Padh, Neeta Shrivastava.   

Abstract

Isolating quality DNA from tissues/cells presents a variety of problems in particular when plants are used as the source material. The specific characteristics of plants like the presence of rigid polysaccharide cell wall, pigments, chemical heterogeneity of secondary metabolites found in diverse species of plants, etc., necessitate special consideration and skill during isolation procedure. Until now, numerous protocols have been published for the purpose, but none is found to be universally applicable. Various factors starting from the selection of source material to the concentration of metabolites present in the plant decide the course of the isolation procedure. The present review is an update of various methods used for plant genomic DNA isolation, and it epitomizes the various problems faced and the solutions made to contend with them during DNA isolation from plant cells.

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Year:  2007        PMID: 17285676     DOI: 10.1002/biot.200600195

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  25 in total

1.  Two micro-scale protocols for the isolation of DNA from polysaccharide-rich plant tissue.

Authors:  Lara D Shepherd; Todd G B McLay
Journal:  J Plant Res       Date:  2010-10-07       Impact factor: 2.629

2.  Comparing DNA extraction methods for analysis of botanical materials found in anti-diabetic supplements.

Authors:  Jose P Llongueras; Saraswathy Nair; Dayana Salas-Leiva; Andrea E Schwarzbach
Journal:  Mol Biotechnol       Date:  2013-03       Impact factor: 2.695

3.  CKC: isolation of nucleic acids from a diversity of plants using CTAB and silica columns.

Authors:  David C Henderson; John Hammond
Journal:  Mol Biotechnol       Date:  2013-02       Impact factor: 2.695

4.  A rapid and efficient method for isolating high quality DNA from leaves of carnivorous plants from the Drosera genus.

Authors:  Flore Biteau; Estelle Nisse; Alain Hehn; Sissi Miguel; Paul Hannewald; Frédéric Bourgaud
Journal:  Mol Biotechnol       Date:  2012-07       Impact factor: 2.695

5.  Inclusion of 2-Mercaptoethanol in Lysis Buffer Could Interfere with Isolation of High Molecular Weight DNA from Freshwater Microalgae.

Authors:  Willy Yee; Janushree Nanda Kumar; Priya Devi Muthusamy
Journal:  Indian J Microbiol       Date:  2017-12-14       Impact factor: 2.461

6.  Suitability of quantitative real-time PCR to estimate the biomass of fungal root endophytes.

Authors:  Christoph Tellenbach; Christoph R Grünig; Thomas N Sieber
Journal:  Appl Environ Microbiol       Date:  2010-07-02       Impact factor: 4.792

7.  Combining allele frequency and tree-based approaches improves phylogeographic inference from natural history collections.

Authors:  Megan Ruffley; Megan L Smith; Anahí Espíndola; Bryan C Carstens; Jack Sullivan; David C Tank
Journal:  Mol Ecol       Date:  2018-02-11       Impact factor: 6.185

8.  Multiplex PCR to detect four different tomato-infecting pathogens.

Authors:  Gabriela Alejandra Quintero-Vásquez; María Luisa Bazán-Tejeda; Eva Martínez-Peñafiel; Luis Kameyama-Kawabe; Rosa María Bermúdez-Cruz
Journal:  Folia Microbiol (Praha)       Date:  2012-11-08       Impact factor: 2.099

9.  DNA extraction and amplification from contemporary Polynesian bark-cloth.

Authors:  Ximena Moncada; Claudia Payacán; Francisco Arriaza; Sergio Lobos; Daniela Seelenfreund; Andrea Seelenfreund
Journal:  PLoS One       Date:  2013-02-21       Impact factor: 3.240

10.  Plant DNA Barcode as a Tool for Root Identification in Hypogea: The Case of the Etruscan Tombs of Tarquinia (Central Italy).

Authors:  Daniela Isola; Flavia Bartoli; Simone Langone; Simona Ceschin; Laura Zucconi; Giulia Caneva
Journal:  Plants (Basel)       Date:  2021-06-03
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