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Literature DB >> 17279754

Fluorescent sequence-specific dsDNA binding oligomers.

David M Chenoweth¹, Anne Viger, Peter B Dervan.

Abstract

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Year: 2007 PMID： 17279754 PMCID： PMC3066654 DOI： 10.1021/ja0682576

Source DB: PubMed Journal: J Am Chem Soc ISSN： 0002-7863 Impact factor: 15.419

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15 in total

1. Detection of PCR products using self-probing amplicons and fluorescence.

Authors: D Whitcombe; J Theaker; S P Guy; T Brown; S Little
Journal: Nat Biotechnol Date: 1999-08 Impact factor: 54.908

2. Mode of action and application of Scorpion primers to mutation detection.

Authors: N Thelwell; S Millington; A Solinas; J Booth; T Brown
Journal: Nucleic Acids Res Date: 2000-10-01 Impact factor: 16.971

3. Exploring the limits of benzimidazole DNA-binding oligomers for the hypoxia inducible factor (HIF) site.

Authors: Anne Viger; Peter B Dervan
Journal: Bioorg Med Chem Date: 2006-09-12 Impact factor: 3.641

4. Sequence-specific fluorescence detection of DNA by polyamide-thiazole orange conjugates.

Authors: Eric J Fechter; Bogdan Olenyuk; Peter B Dervan
Journal: J Am Chem Soc Date: 2005-11-30 Impact factor: 15.419

5. Molecular beacons: probes that fluoresce upon hybridization.

Authors: S Tyagi; F R Kramer
Journal: Nat Biotechnol Date: 1996-03 Impact factor: 54.908

6. Spectral genotyping of human alleles.

Authors: L G Kostrikis; S Tyagi; M M Mhlanga; D D Ho; F R Kramer
Journal: Science Date: 1998-02-20 Impact factor: 47.728

7. Programmable oligomers for minor groove DNA recognition.

Authors: Raymond M Doss; Michael A Marques; Shane Foister; David M Chenoweth; Peter B Dervan
Journal: J Am Chem Soc Date: 2006-07-19 Impact factor: 15.419

8. Light-up probes: thiazole orange-conjugated peptide nucleic acid for detection of target nucleic acid in homogeneous solution.

Authors: N Svanvik; G Westman; D Wang; M Kubista
Journal: Anal Biochem Date: 2000-05-15 Impact factor: 3.365

9. Displacement of D1, HP1 and topoisomerase II from satellite heterochromatin by a specific polyamide.

Authors: Roxane Blattes; Caroline Monod; Guillaume Susbielle; Olivier Cuvier; Jian-hong Wu; Tao-shih Hsieh; Ulrich K Laemmli; Emmanuel Käs
Journal: EMBO J Date: 2006-05-04 Impact factor: 11.598

10. Programmable oligomers targeting 5'-GGGG-3' in the minor groove of DNA and NF-kappaB binding inhibition.

Authors: David M Chenoweth; Julie A Poposki; Michael A Marques; Peter B Dervan
Journal: Bioorg Med Chem Date: 2006-10-26 Impact factor: 3.641

13 in total

1. Quantitating the concentration of Py-Im polyamide-fluorescein conjugates in live cells.

Authors: Carey F Hsu; Peter B Dervan
Journal: Bioorg Med Chem Lett Date: 2008-05-20 Impact factor: 2.823

2. The Thiophene "Sigma-Hole" as a Concept for Preorganized, Specific Recognition of G⋅C Base Pairs in the DNA Minor Groove.

Authors: Pu Guo; Ananya Paul; Arvind Kumar; Abdelbasset A Farahat; Dhiraj Kumar; Siming Wang; David W Boykin; W David Wilson
Journal: Chemistry Date: 2016-09-14 Impact factor: 5.236

Fluorescent sequence-specific dsDNA binding oligomers.

1. Detection of PCR products using self-probing amplicons and fluorescence.

2. Mode of action and application of Scorpion primers to mutation detection.

3. Exploring the limits of benzimidazole DNA-binding oligomers for the hypoxia inducible factor (HIF) site.

4. Sequence-specific fluorescence detection of DNA by polyamide-thiazole orange conjugates.

5. Molecular beacons: probes that fluoresce upon hybridization.

6. Spectral genotyping of human alleles.

7. Programmable oligomers for minor groove DNA recognition.

8. Light-up probes: thiazole orange-conjugated peptide nucleic acid for detection of target nucleic acid in homogeneous solution.

9. Displacement of D1, HP1 and topoisomerase II from satellite heterochromatin by a specific polyamide.

10. Programmable oligomers targeting 5'-GGGG-3' in the minor groove of DNA and NF-kappaB binding inhibition.

1. Quantitating the concentration of Py-Im polyamide-fluorescein conjugates in live cells.

2. The Thiophene "Sigma-Hole" as a Concept for Preorganized, Specific Recognition of G⋅C Base Pairs in the DNA Minor Groove.

3. Toward a general approach for RNA-templated hierarchical assembly of split-proteins.

4. Fluorescence assay of polyamide-DNA interactions.

5. DNA-Binding Properties of New Fluorescent AzaHx Amides: Methoxypyridylazabenzimidazolepyrroleimidazole/pyrrole.

6. Templated chemistry for sequence-specific fluorogenic detection of duplex DNA.

7. Next generation hairpin polyamides with (R)-3,4-diaminobutyric acid turn unit.

8. Oligomerization route to Py-Im polyamide macrocycles.

9. Sensitivity of Ru(bpy)2dppz2+ luminescence to DNA defects.

Review 10. Programmable DNA-binding small molecules.