Literature DB >> 17270909

Clustering protein-protein docking predictions.

W Tong1, Z Weng.   

Abstract

We describe a clustering algorithm for improving protein-protein docking predictions. The algorithm was applied to two sets of predictions for 36 test cases, one set generated with a rigid-body docking algorithm ZDOCK, and the other set with ZDOCK followed by a refinement algorithm RDOCK, and consistent improvement was observed.

Year:  2004        PMID: 17270909     DOI: 10.1109/IEMBS.2004.1403850

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  4 in total

1.  dockYard--a repository to assist modeling of protein-protein docking.

Authors:  Pralay Mitra; Debnath Pal
Journal:  J Mol Model       Date:  2010-06-04       Impact factor: 1.810

2.  A combination of rescoring and refinement significantly improves protein docking performance.

Authors:  Brian Pierce; Zhiping Weng
Journal:  Proteins       Date:  2008-07

3.  Protein docking prediction using predicted protein-protein interface.

Authors:  Bin Li; Daisuke Kihara
Journal:  BMC Bioinformatics       Date:  2012-01-10       Impact factor: 3.169

4.  Evaluation of the coarse-grained OPEP force field for protein-protein docking.

Authors:  Philipp Kynast; Philippe Derreumaux; Birgit Strodel
Journal:  BMC Biophys       Date:  2016-04-21       Impact factor: 4.778

  4 in total

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