Literature DB >> 17267395

Characterization of mutants that change the hydrogen bonding of the semiquinone radical at the QH site of the cytochrome bo3 from Escherichia coli.

Lai Lai Yap1, Rimma I Samoilova, Robert B Gennis, Sergei A Dikanov.   

Abstract

The cytochrome bo3 ubiquinol oxidase catalyzes the two-electron oxidation of ubiquinol in the cytoplasmic membrane of Escherichia coli, and reduces O2 to water. This enzyme has a high affinity quinone binding site (QH), and the quinone bound to this site acts as a cofactor, necessary for rapid electron transfer from substrate ubiquinol, which binds at a separate site (QL), to heme b. Previous pulsed EPR studies have shown that a semiquinone at the QH site formed during the catalytic cycle is a neutral species, with two strong hydrogen bonds to Asp-75 and either Arg-71 or Gln-101. In the current work, pulsed EPR studies have been extended to two mutants at the QH site. The D75E mutation has little influence on the catalytic activity, and the pattern of hydrogen bonding is similar to the wild type. In contrast, the D75H mutant is virtually inactive. Pulsed EPR revealed significant structural changes in this mutant. The hydrogen bond to Arg-71 or Gln-101 that is present in both the wild type and D75E mutant oxidases is missing in the D75H mutant. Instead, the D75H has a single, strong hydrogen bond to a histidine, likely His-75. The D75H mutant stabilizes an anionic form of the semiquinone as a result of the altered hydrogen bond network. Either the redistribution of charge density in the semiquinone species, or the altered hydrogen bonding network is responsible for the loss of catalytic function.

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Year:  2007        PMID: 17267395     DOI: 10.1074/jbc.M611595200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  15 in total

1.  A caged, destabilized, free radical intermediate in the q-cycle.

Authors:  Preethi R Vennam; Nicholas Fisher; Matthew D Krzyaniak; David M Kramer; Michael K Bowman
Journal:  Chembiochem       Date:  2013-09-05       Impact factor: 3.164

2.  A rapid and robust method for selective isotope labeling of proteins.

Authors:  Myat T Lin; Lindsay J Sperling; Heather L Frericks Schmidt; Ming Tang; Rimma I Samoilova; Takashi Kumasaka; Toshio Iwasaki; Sergei A Dikanov; Chad M Rienstra; Robert B Gennis
Journal:  Methods       Date:  2011-09-08       Impact factor: 3.608

3.  Differential effects of glutamate-286 mutations in the aa(3)-type cytochrome c oxidase from Rhodobacter sphaeroides and the cytochrome bo(3) ubiquinol oxidase from Escherichia coli.

Authors:  Tsuyoshi Egawa; Krithika Ganesan; Myat T Lin; Michelle A Yu; Jonathan P Hosler; Syun-Ru Yeh; Denis L Rousseau; Robert B Gennis
Journal:  Biochim Biophys Acta       Date:  2011-06-12

4.  Interactions of intermediate semiquinone with surrounding protein residues at the Q(H) site of wild-type and D75H mutant cytochrome bo3 from Escherichia coli.

Authors:  Myat T Lin; Amgalanbaatar Baldansuren; Richard Hart; Rimma I Samoilova; Kuppala V Narasimhulu; Lai Lai Yap; Sylvia K Choi; Patrick J O'Malley; Robert B Gennis; Sergei A Dikanov
Journal:  Biochemistry       Date:  2012-04-22       Impact factor: 3.162

5.  Q-Band Electron-Nuclear Double Resonance Reveals Out-of-Plane Hydrogen Bonds Stabilize an Anionic Ubisemiquinone in Cytochrome bo3 from Escherichia coli.

Authors:  Chang Sun; Alexander T Taguchi; Josh V Vermaas; Nathan J Beal; Patrick J O'Malley; Emad Tajkhorshid; Robert B Gennis; Sergei A Dikanov
Journal:  Biochemistry       Date:  2016-09-28       Impact factor: 3.162

6.  Identification of the nitrogen donor hydrogen bonded with the semiquinone at the Q(H) site of the cytochrome bo3 from Escherichia coli.

Authors:  Myat T Lin; Rimma I Samoilova; Robert B Gennis; Sergei A Dikanov
Journal:  J Am Chem Soc       Date:  2008-11-26       Impact factor: 15.419

7.  Accommodation of two diatomic molecules in cytochrome bo: insights into NO reductase activity in terminal oxidases.

Authors:  Takahiro Hayashi; Myat T Lin; Krithika Ganesan; Ying Chen; James A Fee; Robert B Gennis; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

8.  Communication between R481 and Cu(B) in cytochrome bo(3) ubiquinol oxidase from Escherichia coli.

Authors:  Tsuyoshi Egawa; Myat T Lin; Jonathan P Hosler; Robert B Gennis; Syun-Ru Yeh; Denis L Rousseau
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

9.  A study of cytochrome bo3 in a tethered bilayer lipid membrane.

Authors:  Sophie A Weiss; Richard J Bushby; Stephen D Evans; Lars J C Jeuken
Journal:  Biochim Biophys Acta       Date:  2010-01-21

10.  Hydrogen bonds between nitrogen donors and the semiquinone in the Qi-site of the bc1 complex.

Authors:  Sergei A Dikanov; J Todd Holland; Burkhard Endeward; Derrick R J Kolling; Rimma I Samoilova; Thomas F Prisner; Antony R Crofts
Journal:  J Biol Chem       Date:  2007-07-05       Impact factor: 5.157

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