Literature DB >> 17263386

Collective relaxation of protein protons at very low magnetic field: a new window on protein dynamics and aggregation.

Claudio Luchinat1, Giacomo Parigi.   

Abstract

Since the recent availability of high sensitivity field-cycling relaxometers, it has become possible to measure the protein proton relaxation in millimolar protein solutions as a function of magnetic field. In principle, this provides direct access to the so-called spectral density function of protein protons and, hence, to a full set of dynamic parameters. Understanding the dynamic behavior of biological molecules is increasingly appreciated as crucial to understanding their function. However, theoretical tools to analyze the collective relaxation behavior of protons in solute macromolecules over a wide range of magnetic fields are lacking. A complete relaxation matrix analysis of such behavior is described here. This analysis provides excellent predictions of the experimental proton magnetization decays/recoveries-measured to an unprecedented level of accuracy by a last-generation fast field-cycling relaxometer-of two different globular proteins, hen egg white lysozyme and human serum albumin. The new experimentally validated theoretical model is then used to extract dynamic information on these systems. A "collective" order parameter SC2, different from, but complementary to, that commonly extracted from heteronuclear relaxation measurements at high field, is defined and measured. An accurate estimate of the rotational correlation time is obtained: in the case of lysozyme it agrees very well with theoretical predictions; in the case of serum albumin it provides evidence for aggregation at millimolar concentration.

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Year:  2007        PMID: 17263386     DOI: 10.1021/ja0633417

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Structural characterization of human S100A16, a low-affinity calcium binder.

Authors:  Elena Babini; Ivano Bertini; Valentina Borsi; Vito Calderone; Xiaoyu Hu; Claudio Luchinat; Giacomo Parigi
Journal:  J Biol Inorg Chem       Date:  2010-11-03       Impact factor: 3.358

2.  Global and local mobility of apocalmodulin monitored through fast-field cycling relaxometry.

Authors:  Valentina Borsi; Claudio Luchinat; Giacomo Parigi
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

3.  Changes in protein structure and dynamics as a function of hydration from (1)H second moments.

Authors:  Galina Diakova; Yanina A Goddard; Jean-Pierre Korb; Robert G Bryant
Journal:  J Magn Reson       Date:  2007-09-15       Impact factor: 2.229

4.  Mesodynamics in the SARS nucleocapsid measured by NMR field cycling.

Authors:  Michael W Clarkson; Ming Lei; Elan Z Eisenmesser; Wladimir Labeikovsky; Alfred Redfield; Dorothee Kern
Journal:  J Biomol NMR       Date:  2009-07-30       Impact factor: 2.835

5.  Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation.

Authors:  Nasrollah Rezaei-Ghaleh; Giacomo Parigi; Markus Zweckstetter
Journal:  J Phys Chem Lett       Date:  2019-06-06       Impact factor: 6.475

6.  The "long tail" of the protein tumbling correlation function: observation by (1)H NMR relaxometry in a wide frequency and concentration range.

Authors:  Matthias Roos; Marius Hofmann; Susanne Link; Maria Ott; Jochen Balbach; Ernst Rössler; Kay Saalwächter; Alexey Krushelnitsky
Journal:  J Biomol NMR       Date:  2015-11-18       Impact factor: 2.835

7.  Nanosecond time scale motions in proteins revealed by high-resolution NMR relaxometry.

Authors:  Cyril Charlier; Shahid Nawaz Khan; Thorsten Marquardsen; Philippe Pelupessy; Volker Reiss; Dimitris Sakellariou; Geoffrey Bodenhausen; Frank Engelke; Fabien Ferrage
Journal:  J Am Chem Soc       Date:  2013-11-26       Impact factor: 15.419

  7 in total

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