Literature DB >> 17261809

The tail of the ParG DNA segregation protein remodels ParF polymers and enhances ATP hydrolysis via an arginine finger-like motif.

Daniela Barillà1, Emma Carmelo, Finbarr Hayes.   

Abstract

The ParF protein of plasmid TP228 belongs to the ubiquitous superfamily of ParA ATPases that drive DNA segregation in bacteria. ATP-bound ParF polymerizes into multistranded filaments. The partner protein ParG is dimeric, consisting of C-termini that interweave into a ribbon-helix-helix domain contacting the centromeric DNA and unstructured N-termini. ParG stimulates ATP hydrolysis by ParF approximately 30-fold. Here, we establish that the mobile tails of ParG are crucial for this enhancement and that arginine R19 within the tail is absolutely required for activation of ParF nucleotide hydrolysis. R19 is part of an arginine finger-like loop in ParG that is predicted to intercalate into the ParF nucleotide-binding pocket thereby promoting ATP hydrolysis. Significantly, mutations of R19 abrogated DNA segregation in vivo, proving that intracellular stimulation of ATP hydrolysis by ParG is a key regulatory process for partitioning. Furthermore, ParG bundles ParF-ATP filaments as well as promoting nucleotide-independent polymerization. The N-terminal flexible tail is required for both activities, because N-terminal DeltaParG polypeptides are defective in both functions. Strikingly, the critical arginine finger-like residue R19 is dispensable for ParG-mediated remodeling of ParF polymers, revealing that the ParG N-terminal tail possesses two separable activities in the interplay with ParF: a catalytic function during ATP hydrolysis and a mechanical role in modulation of polymerization. We speculate that activation of nucleotide hydrolysis via an arginine finger loop may be a conserved, regulatory mechanism of ParA family members and their partner proteins, including ParA-ParB and Soj-Spo0J that mediate DNA segregation and MinD-MinE that determine septum localization.

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Year:  2007        PMID: 17261809      PMCID: PMC1794263          DOI: 10.1073/pnas.0607216104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Structural basis for the topological specificity function of MinE.

Authors:  G F King; Y L Shih; M W Maciejewski; N P Bains; B Pan; S L Rowland; G P Mullen; L I Rothfield
Journal:  Nat Struct Biol       Date:  2000-11

2.  Topological regulation of cell division in E. coli. spatiotemporal oscillation of MinD requires stimulation of its ATPase by MinE and phospholipid.

Authors:  Z Hu; J Lutkenhaus
Journal:  Mol Cell       Date:  2001-06       Impact factor: 17.970

3.  Probing the ATP-binding site of P1 ParA: partition and repression have different requirements for ATP binding and hydrolysis.

Authors:  E Fung; J Y Bouet; B E Funnell
Journal:  EMBO J       Date:  2001-09-03       Impact factor: 11.598

4.  A chloroplast protein homologous to the eubacterial topological specificity factor minE plays a role in chloroplast division.

Authors:  R Itoh; M Fujiwara; N Nagata; S Yoshida
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

5.  The partition system of multidrug resistance plasmid TP228 includes a novel protein that epitomizes an evolutionarily distinct subgroup of the ParA superfamily.

Authors:  F Hayes
Journal:  Mol Microbiol       Date:  2000-08       Impact factor: 3.501

6.  Bacterial chromosome segregation: structure and DNA binding of the Soj dimer--a conserved biological switch.

Authors:  Thomas A Leonard; P Jonathan Butler; Jan Löwe
Journal:  EMBO J       Date:  2005-01-06       Impact factor: 11.598

7.  Importance of F1-ATPase residue alpha-Arg-376 for catalytic transition state stabilization.

Authors:  S Nadanaciva; J Weber; S Wilke-Mounts; A E Senior
Journal:  Biochemistry       Date:  1999-11-23       Impact factor: 3.162

8.  Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element.

Authors:  Andrea Scrima; Alfred Wittinghofer
Journal:  EMBO J       Date:  2006-06-08       Impact factor: 11.598

9.  The unstructured N-terminal tail of ParG modulates assembly of a quaternary nucleoprotein complex in transcription repression.

Authors:  Emma Carmelo; Daniela Barillà; Alexander P Golovanov; Lu-Yun Lian; Andrew Derome; Finbarr Hayes
Journal:  J Biol Chem       Date:  2005-06-12       Impact factor: 5.157

10.  Bacterial DNA segregation dynamics mediated by the polymerizing protein ParF.

Authors:  Daniela Barillà; Mark F Rosenberg; Ulf Nobbmann; Finbarr Hayes
Journal:  EMBO J       Date:  2005-03-10       Impact factor: 11.598

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  42 in total

1.  ParA-like protein uses nonspecific chromosomal DNA binding to partition protein complexes.

Authors:  Mark A J Roberts; George H Wadhams; Katie A Hadfield; Susan Tickner; Judith P Armitage
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-10       Impact factor: 11.205

2.  Structural mechanism of ATP-induced polymerization of the partition factor ParF: implications for DNA segregation.

Authors:  Maria A Schumacher; Qiaozhen Ye; Madhuri T Barge; Massimiliano Zampini; Daniela Barillà; Finbarr Hayes
Journal:  J Biol Chem       Date:  2012-06-06       Impact factor: 5.157

3.  Cell cycle coordination and regulation of bacterial chromosome segregation dynamics by polarly localized proteins.

Authors:  Whitman B Schofield; Hoong Chuin Lim; Christine Jacobs-Wagner
Journal:  EMBO J       Date:  2010-08-27       Impact factor: 11.598

Review 4.  The ParMRC system: molecular mechanisms of plasmid segregation by actin-like filaments.

Authors:  Jeanne Salje; Pananghat Gayathri; Jan Löwe
Journal:  Nat Rev Microbiol       Date:  2010-10       Impact factor: 60.633

5.  AmrZ beta-sheet residues are essential for DNA binding and transcriptional control of Pseudomonas aeruginosa virulence genes.

Authors:  Elizabeth A Waligora; Deborah M Ramsey; Edward E Pryor; Haiping Lu; Thomas Hollis; Gina P Sloan; Rajendar Deora; Daniel J Wozniak
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

6.  Recruitment of the ParG segregation protein to different affinity DNA sites.

Authors:  Massimiliano Zampini; Andrew Derome; Simon E S Bailey; Daniela Barillà; Finbarr Hayes
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

7.  ParP prevents dissociation of CheA from chemotactic signaling arrays and tethers them to a polar anchor.

Authors:  Simon Ringgaard; Martha Zepeda-Rivera; Xiaoji Wu; Kathrin Schirner; Brigid M Davis; Matthew K Waldor
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-30       Impact factor: 11.205

8.  Superstructure of the centromeric complex of TubZRC plasmid partitioning systems.

Authors:  Christopher H S Aylett; Jan Löwe
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-25       Impact factor: 11.205

9.  Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation.

Authors:  Hoong Chuin Lim; Ivan Vladimirovich Surovtsev; Bruno Gabriel Beltran; Fang Huang; Jörg Bewersdorf; Christine Jacobs-Wagner
Journal:  Elife       Date:  2014-05-23       Impact factor: 8.140

10.  The tubulin-like RepX protein encoded by the pXO1 plasmid forms polymers in vivo in Bacillus anthracis.

Authors:  Parvez Akhtar; Syam P Anand; Simon C Watkins; Saleem A Khan
Journal:  J Bacteriol       Date:  2009-02-20       Impact factor: 3.490

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