Literature DB >> 17255503

Recombination and the nature of bacterial speciation.

Christophe Fraser1, William P Hanage, Brian G Spratt.   

Abstract

Genetic surveys reveal the diversity of bacteria and lead to the questioning of species concepts used to categorize bacteria. One difficulty in defining bacterial species arises from the high rates of recombination that results in the transfer of DNA between relatively distantly related bacteria. Barriers to this process, which could be used to define species naturally, are not apparent. Here, we review conceptual models of bacterial speciation and describe our computer simulations of speciation. Our findings suggest that the rate of recombination and its relation to genetic divergence have a strong influence on outcomes. We propose that a distinction be made between clonal divergence and sexual speciation. Hence, to make sense of bacterial diversity, we need data not only from genetic surveys but also from experimental determination of selection pressures and recombination rates and from theoretical models.

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Year:  2007        PMID: 17255503      PMCID: PMC2220085          DOI: 10.1126/science.1127573

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  30 in total

Review 1.  Lateral gene transfer and the nature of bacterial innovation.

Authors:  H Ochman; J G Lawrence; E A Groisman
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

Review 2.  The relative contributions of recombination and point mutation to the diversification of bacterial clones.

Authors:  B G Spratt; W P Hanage; E J Feil
Journal:  Curr Opin Microbiol       Date:  2001-10       Impact factor: 7.934

Review 3.  What are bacterial species?

Authors:  Frederick M Cohan
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

4.  Dual roles for DNA sequence identity and the mismatch repair system in the regulation of mitotic crossing-over in yeast.

Authors:  A Datta; M Hendrix; M Lipsitch; S Jinks-Robertson
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-02       Impact factor: 11.205

5.  Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation.

Authors:  J Majewski; P Zawadzki; P Pickerill; F M Cohan; C G Dowson
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

6.  Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Authors:  H Tettelin; K E Nelson; I T Paulsen; J A Eisen; T D Read; S Peterson; J Heidelberg; R T DeBoy; D H Haft; R J Dodson; A S Durkin; M Gwinn; J F Kolonay; W C Nelson; J D Peterson; L A Umayam; O White; S L Salzberg; M R Lewis; D Radune; E Holtzapple; H Khouri; A M Wolf; T R Utterback; C L Hansen; L A McDonald; T V Feldblyum; S Angiuoli; T Dickinson; E K Hickey; I E Holt; B J Loftus; F Yang; H O Smith; J C Venter; B A Dougherty; D A Morrison; S K Hollingshead; C M Fraser
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

7.  How clonal are bacteria?

Authors:  J M Smith; N H Smith; M O'Rourke; B G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

8.  The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust.

Authors:  P Zawadzki; M S Roberts; F M Cohan
Journal:  Genetics       Date:  1995-07       Impact factor: 4.562

9.  Mismatch induced speciation in Salmonella: model and data.

Authors:  Daniel Falush; Mia Torpdahl; Xavier Didelot; Donald F Conrad; Daniel J Wilson; Mark Achtman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-11-29       Impact factor: 6.237

10.  Fuzzy species among recombinogenic bacteria.

Authors:  William P Hanage; Christophe Fraser; Brian G Spratt
Journal:  BMC Biol       Date:  2005-03-07       Impact factor: 7.431

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  213 in total

Review 1.  Impact of recombination on bacterial evolution.

Authors:  Xavier Didelot; Martin C J Maiden
Journal:  Trends Microbiol       Date:  2010-05-06       Impact factor: 17.079

2.  Phylogenetic incongruence arising from fragmented speciation in enteric bacteria.

Authors:  Adam C Retchless; Jeffrey G Lawrence
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

3.  Ecological adaptation in bacteria: speciation driven by codon selection.

Authors:  Adam C Retchless; Jeffrey G Lawrence
Journal:  Mol Biol Evol       Date:  2012-06-26       Impact factor: 16.240

4.  Inferring bacterial genome flux while considering truncated genes.

Authors:  Weilong Hao; G Brian Golding
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

5.  Genome changes after gene duplication: haploidy vs. diploidy.

Authors:  Cheng Xue; Ren Huang; Taylor J Maxwell; Yun-Xin Fu
Journal:  Genetics       Date:  2010-06-15       Impact factor: 4.562

6.  argC Orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti.

Authors:  Rafael Díaz; Carmen Vargas-Lagunas; Miguel Angel Villalobos; Humberto Peralta; Yolanda Mora; Sergio Encarnación; Lourdes Girard; Jaime Mora
Journal:  J Bacteriol       Date:  2010-11-12       Impact factor: 3.490

7.  Recombination shapes the structure of an environmental Vibrio cholerae population.

Authors:  Daniel P Keymer; Alexandria B Boehm
Journal:  Appl Environ Microbiol       Date:  2010-11-12       Impact factor: 4.792

8.  Predicting microbial traits with phylogenies.

Authors:  Marta Goberna; Miguel Verdú
Journal:  ISME J       Date:  2015-09-15       Impact factor: 10.302

9.  Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages.

Authors:  Cheryl P Andam; Mallory J Choudoir; Anh Vinh Nguyen; Han Sol Park; Daniel H Buckley
Journal:  ISME J       Date:  2016-02-05       Impact factor: 10.302

10.  Genetic relatedness and novel sequence types of clinical Aeromonas dhakensis from Malaysia.

Authors:  Tien Tien Vicky Lau; Jin-Ai Mary Anne Tan; S D Puthucheary; Suat-Moi Puah; Kek-Heng Chua
Journal:  Braz J Microbiol       Date:  2020-08-07       Impact factor: 2.476

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