Literature DB >> 17253667

Resolution of identity density functional theory augmented with an empirical dispersion term (RI-DFT-D): a promising tool for studying isolated small peptides.

Jirí Cerný1, Petr Jurecka, Pavel Hobza, Haydée Valdés.   

Abstract

Resolution of identity standard density functional theory augmented with a damped empirical dispersion term (RI-DFT-D) calculations have been carried out on a set of lowest energy minima of tryptophyl-glycine (Trp-Gly) and tryptophyl-glycyl-glycine (Trp-Gly-Gly) peptides. RI-DFT-D (TPSS/TZVP) results are in excellent agreement with benchmark data based on the CCSD(T) method. Experimental spectra could be assigned according to the calculated IR frequencies. Central processing unit (CPU) time requirements are only slightly higher than those needed for the DFT calculations. Consequently, RI-DFT-D theory seems to be a promising methodology for studying oligopeptides with accuracy comparable to ab initio quantum chemical calculations.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17253667     DOI: 10.1021/jp066504m

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  Selective Disruption of Respiratory Supercomplexes as a New Strategy to Suppress Her2high Breast Cancer.

Authors:  Katerina Rohlenova; Karishma Sachaphibulkij; Jan Stursa; Ayenachew Bezawork-Geleta; Jan Blecha; Berwini Endaya; Lukas Werner; Jiri Cerny; Renata Zobalova; Jacob Goodwin; Tomas Spacek; Elham Alizadeh Pesdar; Bing Yan; Maria Nga Nguyen; Magdalena Vondrusova; Margaryta Sobol; Petr Jezek; Pavel Hozak; Jaroslav Truksa; Jakub Rohlena; Lan-Feng Dong; Jiri Neuzil
Journal:  Antioxid Redox Signal       Date:  2016-08-22       Impact factor: 8.401

2.  A DFT study on the role of long range correlation interaction and solvent effects in homochiral and heterochiral cyclic trimerization of imidazole based heterocyclic amino acids.

Authors:  N V Suresh Kumar
Journal:  J Mol Model       Date:  2016-05-25       Impact factor: 1.810

3.  Crystal structure of human interferon-γ receptor 2 reveals the structural basis for receptor specificity.

Authors:  Pavel Mikulecký; Jirí Zahradník; Petr Kolenko; Jiří Černý; Tatsiana Charnavets; Lucie Kolářová; Iva Nečasová; Phuong Ngoc Pham; Bohdan Schneider
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-08-18       Impact factor: 7.652

4.  Reprogramming of leukemic cell metabolism through the naphthoquinonic compound Quambalarine B.

Authors:  Karel Vališ; Valéria Grobárová; Lucie Hernychová; Martina Bugáňová; Daniel Kavan; Martin Kalous; Jiří Černý; Eva Stodůlková; Marek Kuzma; Miroslav Flieger; Jan Černý; Petr Novák
Journal:  Oncotarget       Date:  2017-10-07
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.