Literature DB >> 17253118

AllChem: generating and searching 10(20) synthetically accessible structures.

Richard D Cramer1, Farhad Soltanshahi, Robert Jilek, Brian Campbell.   

Abstract

AllChem is a system that is intended to make practical the generation and searching of an unprecedentedly vast number ( approximately 10(20)) of synthetically accessible and medicinally relevant structures. Also, by providing possible synthetic routes to a structure along with its design rationale, AllChem encourages simultaneous consideration of both costs and benefits during each lead discovery and optimization decision, thereby promising to be effective with synthetic chemists among its primary users. AllChem is still under intensive development so the following initial description necessarily has more the character of an interim progress report than of a finished research publication.

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Year:  2007        PMID: 17253118     DOI: 10.1007/s10822-006-9093-8

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   4.179


  10 in total

1.  Toward general methods of targeted library design: topomer shape similarity searching with diverse structures as queries.

Authors:  K M Andrews; R D Cramer
Journal:  J Med Chem       Date:  2000-05-04       Impact factor: 7.446

2.  Topomer CoMFA: a design methodology for rapid lead optimization.

Authors:  Richard D Cramer
Journal:  J Med Chem       Date:  2003-01-30       Impact factor: 7.446

Review 3.  Predicting synthetic accessibility: application in drug discovery and development.

Authors:  J C Baber; M Feher
Journal:  Mini Rev Med Chem       Date:  2004-08       Impact factor: 3.862

4.  Topomers: a validated protocol for their self-consistent generation.

Authors:  Robert J Jilek; Richard D Cramer
Journal:  J Chem Inf Comput Sci       Date:  2004 Jul-Aug

5.  "Lead hopping". Validation of topomer similarity as a superior predictor of similar biological activities.

Authors:  Richard D Cramer; Robert J Jilek; Stefan Guessregen; Stephanie J Clark; Bernd Wendt; Robert D Clark
Journal:  J Med Chem       Date:  2004-12-30       Impact factor: 7.446

Review 6.  Computer-aided organic synthesis.

Authors:  Matthew H Todd
Journal:  Chem Soc Rev       Date:  2005-02-08       Impact factor: 54.564

7.  Quest for the rings. In silico exploration of ring universe to identify novel bioactive heteroaromatic scaffolds.

Authors:  Peter Ertl; Stephen Jelfs; Jörg Mühlbacher; Ansgar Schuffenhauer; Paul Selzer
Journal:  J Med Chem       Date:  2006-07-27       Impact factor: 7.446

8.  MAPOS: a computer program for organic synthesis design based on synthon model of organic chemistry.

Authors:  L Matyska; J Koca
Journal:  J Chem Inf Comput Sci       Date:  1991-08

9.  Computer-assisted design of complex organic syntheses.

Authors:  E J Corey; W T Wipke
Journal:  Science       Date:  1969-10-10       Impact factor: 47.728

10.  Bioisosterism as a molecular diversity descriptor: steric fields of single "topomeric" conformers.

Authors:  R D Cramer; R D Clark; D E Patterson; A M Ferguson
Journal:  J Med Chem       Date:  1996-08-02       Impact factor: 7.446

  10 in total
  6 in total

1.  Tautomers and topomers: challenging the uncertainties of direct physicochemical modeling.

Authors:  Richard D Cramer
Journal:  J Comput Aided Mol Des       Date:  2010-03-21       Impact factor: 3.686

2.  Comparison of Large Chemical Spaces.

Authors:  Uta Lessel; Christian Lemmen
Journal:  ACS Med Chem Lett       Date:  2019-09-11       Impact factor: 4.345

3.  Three-dimensional quantitative structural-activity relationship and molecular dynamics study of multivariate substituted 4-oxyquinazoline HDAC6 inhibitors.

Authors:  Linan Zhao; Le Fu; Guangping Li; Yongxin Yu; Juan Wang; Haoran Liang; Mao Shu; Zhihua Lin; Yuanqiang Wang
Journal:  Mol Divers       Date:  2022-06-29       Impact factor: 2.943

4.  No electron left behind: a rule-based expert system to predict chemical reactions and reaction mechanisms.

Authors:  Jonathan H Chen; Pierre Baldi
Journal:  J Chem Inf Model       Date:  2009-09       Impact factor: 4.956

5.  A new paradigm for designing ring construction strategies for green organic synthesis: implications for the discovery of multicomponent reactions to build molecules containing a single ring.

Authors:  John Andraos
Journal:  Beilstein J Org Chem       Date:  2016-11-16       Impact factor: 2.883

6.  Template-based de novo design for type II kinase inhibitors and its extented application to acetylcholinesterase inhibitors.

Authors:  Bo-Han Su; Yi-Syuan Huang; Chia-Yun Chang; Yi-Shu Tu; Yufeng J Tseng
Journal:  Molecules       Date:  2013-10-31       Impact factor: 4.411

  6 in total

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